| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_0401 |
|---|
| Symbol | |
|---|
| ID | 8490367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | + |
|---|
| Start bp | 411058 |
|---|
| End bp | 412221 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 646358423 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_003238404 |
|---|
| Protein GI | 260892307 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000371748 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGG TTGAGGCAGG GGTAGTAGTG GTGGCGGCGG GGCAAAGCCG CCGCATGGGA
GAAGGCCCTA AAAAGCAATT CCGCCAGCTT CTGGACCTTC CCGTATTCGC TTGGTCTCTA
GAAGTGTGCG AGAAGGTAGA CCTGGTCAAA GAAGTGGTGC TGGTGGTTCC TCCGGGAGAA
GAAAATTTTT GCCTGGAGCT GGTAAAAGAC AGGTATCCCA AGCTCAAGGC GGTGGTGCCT
GGCGGTGAGC ACCGGCAGGA CTCGGTCTTT GCCGGTCTTC TTCACCTTTC CCCTCTGCCC
GTGGCGGTGG TGCACGACGG GGCTCGCCCT CTGGTAACTC CAGCCTTGAT GGAGGAGGTT
ATCAAAGCAG CGGCGGAGTG GGGTGGAGCG ATTGCCGCCG TACCTGTGCG GGACACCGTC
AAGCGGGTAG ATGCGGAGGG AAGGATAAAA GAAACCCTAC CGCGCGAGGA GATCTACCTG
GCTCAAACTC CTCAGGCTTT CCGCTACGAA CTCCTTATGC AGGCGCACCG GCGGGCTAAG
GAAGAGAACT ACTACGCCAC CGACGACGCC GCGCTGGTAG AGAGGGAGGG GGTTAAGGTC
AAGGTGGTTC CGGGGAGTTA TTCCAATCTC AAGATCACCA CCCCGGAAGA TCTGGAGCTG
GCCCGGGCCT TGGTAGGCGG AAACGACCCC GGCCTACGAA TAGGCATAGG CTACGACGTC
CATCCGCTGG TAGAGGGAAG GCCTCTCATT TTGGGCGGAG TGGAAATAGA AGCGCCGCTG
GGGCTTGCAG GGCATTCCGA TGCCGATGTG CTCTGTCATG CCTTAATGGA CGCCCTGCTG
GGCGCCATGG GCAAAGAGGA TATAGGGCAC TTTTTCCCTC CAAGTGATCC GGCCTACCGG
GGAGCCAGAA GCCTTGACCT GCTGGCCCGC GTGTGCACGT GGGTGAAGGA AGCCGGCTTC
CGGGTAGTGA ACGTGGACGC GGTGGTGCTG GCCGAGCGCC CCCGTCTTGC CCCTTACCTT
CCCGCCATTA AGGCCAACTT CGCCCGGGTT CTGGGGATTC CGGAGAGCAG GGTAGGGATA
AAGGCCACTA CCACGGAGGG GCTGGGCTTT GTGGGCCGGG AGGAGGGGAT GGCGGCCTAC
GCGGTGGTTC TGCTGGCTAA GTAA
|
|---|
| Protein sequence | MPLVEAGVVV VAAGQSRRMG EGPKKQFRQL LDLPVFAWSL EVCEKVDLVK EVVLVVPPGE
ENFCLELVKD RYPKLKAVVP GGEHRQDSVF AGLLHLSPLP VAVVHDGARP LVTPALMEEV
IKAAAEWGGA IAAVPVRDTV KRVDAEGRIK ETLPREEIYL AQTPQAFRYE LLMQAHRRAK
EENYYATDDA ALVEREGVKV KVVPGSYSNL KITTPEDLEL ARALVGGNDP GLRIGIGYDV
HPLVEGRPLI LGGVEIEAPL GLAGHSDADV LCHALMDALL GAMGKEDIGH FFPPSDPAYR
GARSLDLLAR VCTWVKEAGF RVVNVDAVVL AERPRLAPYL PAIKANFARV LGIPESRVGI
KATTTEGLGF VGREEGMAAY AVVLLAK
|
|---|
| |