| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_0210 |
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| Symbol | |
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| ID | 8490175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ammonifex degensii KC4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013385 |
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| Strand | + |
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| Start bp | 207854 |
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| End bp | 210001 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 646358249 |
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| Product | ribonuclease R |
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| Protein accession | YP_003238231 |
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| Protein GI | 260892134 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0123436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTACCA AGAAGGAAAT TCTGGAATTC ATGAAAGCCG GGGCCTACCG CCCGCTGACC
CTTAACGAGT TGGCGCGGAT CTTTCTTCCC GACGGTAAGG GTCTGGGAGC CTTTAAGCGG
CTTTTGCGGG AGATGGAAGA AGAGGGGCTT ATATACCAGA CGCGGGCGGC GCGCTACGGC
CTGCCGGAGC AGTTCAACCT GGTGGTGGGG CGCCTAGAGT GCCACCCTCG GGGTTACGCC
TTTTTAGTGC CCGACCGCGA GGGGGAGCCC GACGTCTTCA TCCCTCCCGG CTGCCTGGGA
GGGGCTATGC ATCAGGACCG GGTGGCGGTA AGGCTCTTCC CCGGCAGTCA CGGGCGTACC
CGGGAGGGGG AAGTGGTGCG GGTGCTGCGG CGTGCCCACC GGCAGCTGGT GGGCACGCTT
TACAAGAAGC GTCGTTCGGT CTTTGTGGTT CCCGACGATC CCCGGCTCAC CCACCAGGTG
GTAATTCCTA AGGGCAAGCT CAACGGGGCG CGCAACGGGG AAAAGGTGGT GGTGGAACTC
ACCACCTATC CTGGTCCCTA CACTCCGGCC GAAGGCCGGG TGGTGGAGGT CCTGGGGCCG
GAGGACGCCC CCGGCATGGA TATGCTGGTC CTCTGCCGGC GCTATGGGTT GCCGGACGGC
TTCCCGCCGG AAGTGGAGGA AGAGGCGGAA AACATCCCCT TGACCATAAG GCCGGAGGAA
CTGGCGGGAA GAAGGGACTT GCGGGAGTGG CTGATCGTAA CCATCGACGG GGAGGACGCT
AAAGACCTGG ACGACGCGGT GAGCCTGGAG CTCCTGCACG ATGGGACCTA CCGCCTGGGC
GTGCACATAG CCGACGTGAG CTACTACGTG CGGGAGGGGA GCGCGCTCGA CCGGGAAGCC
TTCCAGCGGG GTACCAGTAT TTATCTGCCC GACCGGGTCA TACCCATGCT CCCTCCCCGG
CTCTCCAACG GGATATGCAG CCTCAACCCA GAGGAAGATC GGCTCACCTT GTCGGTGCTC
ATGCGCGTTG ACTCCAAGGG GGAGGTTCTG GAGTACGAGC TCTTCCCCTC GGTTATCCGT
TCTAAAGCGC GGCTCACCTA CCGGGCGGTC AACGACTACC TAGCGGGAAG GGGCGGGGTT
CCTGCTCCCC TACCGGGCCT GGGCCGCATG CTGGAGCTCA TGCAGGAACT CTGCCTTTGC
CTCAGGCGCC GGCGTTTGAA GCAGGGGGCG ATAGACTTCA ACCTGCCGGA GACCAAGGTG
GTCCTGGACG AGGAAGGGCG CACCGTAGAC GTTTACCCGG CAGAGCGGGG CATCGGGGAG
CAGATTATAG AGGAATTCAT GCTCCTGGCC AACGAGACGG TGGCACGGCA CGCGGCCAAG
CTCCAGCTCC CCTTTATCTA CCGGATCCAT CCGCAGCCCG ACCCGGAGAA GGTAGCCAGC
TTAGAGGAGC TTTTGGCCAG CCTGGGTTAC CAAAACACGC GGCTGGGCAC TCTGGAGCCG
GCGCGTTTCC AGGAGGTGCT GGAGGCCGTG GCCGGCAAGC CGGAGGAGCG GCTGGTGAAC
GCGGTGATGC TCCGCTCGCT CAAGCAGGCG CGCTACGCGG CCGAGAGGAG CGAGCACTTC
GGCCTGGCCT CCGAGTACTA CACGCACTTC ACTTCCCCCA TCCGCCGCTA CCCCGACCTT
TTCATCCACC GCGTCCTGCG GGAGACGGTG CTCAAAGGAG CTGGCCTTTC TCCCAGGCGG
CGGGCCCGGC TGGAGAAGCT GGCGCAGGAG GCGGCGGCGC AGTCTTCCGA AAGGGAGCGC
CTGGCCATGG AAGTGGAGCG GGAAGCGGTG GACATAAAGA AGGTGGCCTT TATGGTGGAT
AAGGTAGGCC GGGAGTATGC GGGCTTCATA AGCGGGGTCA CCAACTGGGG CCTTTATGTC
ATGCTGGAGA ACACGGTGGA AGGTCTGGTA CACGTACGCC ACCTCACCGA CGACTTCTAC
TTCTACGACG AGAAAAACTA CGCTCTGGTG GGGCGGCACA CCGGGAAGCG CTGGCGGCTG
GGCGATCCGG TGCGGGTGCG GGTACTGCGG GCTTCGGTAC CCGAGAAGCT GGTGGAGTTC
AGCCTCTTGA CAGAGGCCGA GGCCCCCGAT AAACTTTCAT GTGTATGA
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| Protein sequence | MVTKKEILEF MKAGAYRPLT LNELARIFLP DGKGLGAFKR LLREMEEEGL IYQTRAARYG
LPEQFNLVVG RLECHPRGYA FLVPDREGEP DVFIPPGCLG GAMHQDRVAV RLFPGSHGRT
REGEVVRVLR RAHRQLVGTL YKKRRSVFVV PDDPRLTHQV VIPKGKLNGA RNGEKVVVEL
TTYPGPYTPA EGRVVEVLGP EDAPGMDMLV LCRRYGLPDG FPPEVEEEAE NIPLTIRPEE
LAGRRDLREW LIVTIDGEDA KDLDDAVSLE LLHDGTYRLG VHIADVSYYV REGSALDREA
FQRGTSIYLP DRVIPMLPPR LSNGICSLNP EEDRLTLSVL MRVDSKGEVL EYELFPSVIR
SKARLTYRAV NDYLAGRGGV PAPLPGLGRM LELMQELCLC LRRRRLKQGA IDFNLPETKV
VLDEEGRTVD VYPAERGIGE QIIEEFMLLA NETVARHAAK LQLPFIYRIH PQPDPEKVAS
LEELLASLGY QNTRLGTLEP ARFQEVLEAV AGKPEERLVN AVMLRSLKQA RYAAERSEHF
GLASEYYTHF TSPIRRYPDL FIHRVLRETV LKGAGLSPRR RARLEKLAQE AAAQSSERER
LAMEVEREAV DIKKVAFMVD KVGREYAGFI SGVTNWGLYV MLENTVEGLV HVRHLTDDFY
FYDEKNYALV GRHTGKRWRL GDPVRVRVLR ASVPEKLVEF SLLTEAEAPD KLSCV
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