Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Namu_4501 |
Symbol | |
ID | 8450128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nakamurella multipartita DSM 44233 |
Kingdom | Bacteria |
Replicon accession | NC_013235 |
Strand | + |
Start bp | 5006319 |
End bp | 5008184 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645043543 |
Product | ABC transporter related |
Protein accession | YP_003203771 |
Protein GI | 258654615 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCAACG ACGACGAACC AGCGCCACTC GACCCCATCG AACTACGTCT GCAAGCGAAA GCTGGTCGTC GCAGCGCTGG CCGCCTTGGG TCACTTGTCC ACAAATCGAC ACGGCTAATG TGGCAGGCAG GCCCTCGCAA GTCAATCGTC CTTACCTGCA TACAGGTCAT CAACGCAGCG CTACTTGCAG CCCAGGTCGT AGTCGTTGAG CGACTGGTTT CTGTGGTCAT CGACCTGTCC TCCGGCGCAA CCATGCGGGA TCTGCTTCTG CCACTCGTGG CATTTGCGGT GTTGACCGCG ATCACCACCG TCATCGGCTC GGTCCAAACG CAGATAGGCC GATTGCTAGC AGAATCAGTG GCGCGTCTGA TGTGGCGCTC GGTGTCCGGT GTGGCAGCAG CTGTGACGCT ACGTCATTTC GAGGCTCCCG ACTTCTACGA CCTCTTGCAA CGGGTGCAAA GCAATGCCAC GCGCCCCTTC CAGGTGACTC AGGCCCTTTT GCGCATTCTT GGTGGCCTGA CCGCGACCGT CGGTGTCGGT GCCGTACTTT TCGCGATCCA TCCCATCCTC GTCCCGCTAC TGGCGGTTGG GGGTCTGCCG CTGATCCTTA CCAACCGTGC CGAGAGCAGG CTCGAGTTCA AATTCGCCGT CGACCAAACC ACTAACCAAC GCGAACGCGC TTATCTCACT TTCTTACTGA CTGGGAGAGT CGAAGCCAAG GAGATTCGCG CATTCGACTT GGGTGGACAA TTCGCTGATA GACTGGACCG CCGACACGAC GAGTACATCA CGGCCATGCA CGCGCATGTT CGTCATCGGC TGCGGCTCAA TCTCGTCGGC AATCTGCTGA GCGCGATCCT CCTGAGCTGC ACCATGATCA TCGTTGCCTG GTTCATCGCA GATGGCCAAA TCGACGTTAG TCAAGCCAGC GCCGCGATCG TGGCGATTCG CATGCTACAA GGCCAACTCC AGACGCTGCT CGGCGGAGTC CAAACCATCT TCGAGTCGGG CTTGTTCTTG GATGATGTCG AGTTGTTCCT TCGACTCGGC GCTGAGGCAG AGCGCGATGA GGACGGCGCA CAACCGCCGT CAGAATTCGA GACAATCACG GTCGATAATC TCGGATTCCG ATACCCTGGA AGCACCCAGC ACGCACTCCG CAATGTGAAT ATGCATATCC GGTCCGGATC ACTTGTGGCT TTGGTCGGAG AGAATGGCTC GGGAAAGACG ACATTGGCCA AAATCCTAGC TGGCCTCTAC GACTGCGAGG AAGGGGCCGT GCGATGGGAC GGTGTTGATA CTCGCGAGTT CTCGAGAAAG GCTATCCGAT CGCGGGTGGC GGTCATCTTT CAGGACTTCG CACGTTACGC ATTTACGGCG AGAGAGAACA TTGCTACCGG AGATGGTGCG CATCCCATCA ATGATGATCG GGTGGTTGCG GCGGCGCGAT CTGCCGGGGC CGACGGATTC CTGTCTCGCC TCCCGAAGCA ATATCATACT ATTCTTTCCA GACTGTTTCG TGGAGGACGG GACCTCTCCG GCGGACAATG GCAGCGTGTC GCTATCGCCC GAGCTTACTA TCGAGACGCA CCTCTGGTCA TTCTCGACGA ACCAACTGCA TCGCTCGATG CTCGTGCTGA GCACGACCTC TTCGCGTCGT TGCGGGCAGT CCTGAAGGGC AGAACCGCCA TATTTGTTTC CCACCGCTTT TCGACGGTCC GTACGGCAGA TCTCATCGTT GTGCTGCACG CCGGGCAGAT TGTTGAGTCC GGATCTCACG ACGAACTAAT GGCACGGGGC GGCCGATATG CCGAGCTCTT CCGTCTTCAG GCTGCCGCTT ACCTAGCAGA TGTCGACGAG AATTAG
|
Protein sequence | MSNDDEPAPL DPIELRLQAK AGRRSAGRLG SLVHKSTRLM WQAGPRKSIV LTCIQVINAA LLAAQVVVVE RLVSVVIDLS SGATMRDLLL PLVAFAVLTA ITTVIGSVQT QIGRLLAESV ARLMWRSVSG VAAAVTLRHF EAPDFYDLLQ RVQSNATRPF QVTQALLRIL GGLTATVGVG AVLFAIHPIL VPLLAVGGLP LILTNRAESR LEFKFAVDQT TNQRERAYLT FLLTGRVEAK EIRAFDLGGQ FADRLDRRHD EYITAMHAHV RHRLRLNLVG NLLSAILLSC TMIIVAWFIA DGQIDVSQAS AAIVAIRMLQ GQLQTLLGGV QTIFESGLFL DDVELFLRLG AEAERDEDGA QPPSEFETIT VDNLGFRYPG STQHALRNVN MHIRSGSLVA LVGENGSGKT TLAKILAGLY DCEEGAVRWD GVDTREFSRK AIRSRVAVIF QDFARYAFTA RENIATGDGA HPINDDRVVA AARSAGADGF LSRLPKQYHT ILSRLFRGGR DLSGGQWQRV AIARAYYRDA PLVILDEPTA SLDARAEHDL FASLRAVLKG RTAIFVSHRF STVRTADLIV VLHAGQIVES GSHDELMARG GRYAELFRLQ AAAYLADVDE N
|
| |