| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_4252 |
|---|
| Symbol | |
|---|
| ID | 8449878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 4727371 |
|---|
| End bp | 4728831 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 645043301 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_003203530 |
|---|
| Protein GI | 258654374 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCG CCACACCGAA GCCGGCGGAT AGCCGGACGT TCCTGGGCCA GCCTCGTCAG
CTGGCCACCC TGTTCTCGGT CGAGATGTGG GAACGCTTCT CGTTCTACGG GATGCAGATC
ATCCTGGTCT ATTACTTGTA CTACTCGACG GCCGACGGCG GACTGGGCAT CGACCAGGGC
GTCGCGACCG GCATCGTCGG CGCCTACGGC GGCATGGTCT ACCTGTCCAC CATCCTGGGT
GCCTGGCTGG CCGACCGGGT CATGGGCGCC GAACGCACCC TGTTCTACGC GGCGATTCTG
GTGATGTCGG GCCACATCGC GCTGTCCGCG CTGCCCGGCC TGCTGGGGGT CGGCGTCGGG
CTGGTGTTGA TCGCCTTCGG TTCGGGCGGG GTCAAGGCCA ACTGCACCTC GCTGGTCGGC
ACCCTGTACG AGCCGAGCGA CCCGCGGCGG GACGCGGGCT TCTCCATCTA CTACTTCGGC
ATCAACCTGG GGGCCTTCGC CGGCCCGCTG CTGACCGGCC TGGTGCAGGT CGACTTCGGC
TTCCACTGGG CGTTCCTGGT CGCGGCCATC GGCATGGCCA TCGGGCTGGC CATCTACGCC
GTCGGCCGCC GGAAACTGCC GGCCAGCGCC AACAACGTGC CCAATCCGTT GCCGCCGGAG
CGCCGGATCC GCTACATCGT GGCCGCGGTG GCTGCGGTGG CCCTGGTCGT GCTCGCCGTG
CTCACCGGGG TGCTGACCGC GGACCGCCTC TCCAGCGCGG TGGTGGCGAT CACCATCGTC
GCCGCCGTCG CGTACTTCGT GGTCATCCTG GGCAGCAAGC AGGTGAGCAC CGTCGAGCGC
CGGCGGGTGA TCGCCTTCAT CCCGCTGTTC CTGGTCAGTG CCGTGTTCTG GTCGCTCTAC
CAGCAGCAGT TCACCGTGCT CGCGGTCTAC AGCGACCAGC AGCTGAACCG GGACCTGTTC
GGGTGGGAGA TGCCGGCGAG CTGGGTGCAG TCGATCAACC CGGTGTTCAT CATGATCCTG
TCGCTGGTCT ACGCGGGGGT CTGGACCAAG CTGGGCAACC GGCAACCGTC CAGCCCGGTC
AAGTTCGCGC TGGGCACCAT CATCATGGGC ATCGCGTTCC TGCTGTTCAT CCCGATGGCC
AGCACCGTTC CGAACAGTGC CCCCCTGCTC GGGCTGGTCG GCGTCATCTT CGTCTTCACC
AACGCCGAGC TGCTGATCTC CCCGATCAGC CTGTCGCTGT CCACCAAGCT GGCGCCGAAG
GTCTTCGAGA CGCAGATGGT GGCCCTGCTG TTCCTGTCGA TCGCGCTGGG CACGGCCATG
TCCGGCGTGC TGTCGCAGTA CTACACGATC GAGGACCAGG TCCCCTACTT CGGCATCCTG
GGCTGCATCG CGATCGTCGT CGGCGCGGTG CTGTGGGTGT TCACCAAGCC GATCCTGCGG
CTGATGGGCG GGGTGCGCTG A
|
|---|
| Protein sequence | MTTATPKPAD SRTFLGQPRQ LATLFSVEMW ERFSFYGMQI ILVYYLYYST ADGGLGIDQG
VATGIVGAYG GMVYLSTILG AWLADRVMGA ERTLFYAAIL VMSGHIALSA LPGLLGVGVG
LVLIAFGSGG VKANCTSLVG TLYEPSDPRR DAGFSIYYFG INLGAFAGPL LTGLVQVDFG
FHWAFLVAAI GMAIGLAIYA VGRRKLPASA NNVPNPLPPE RRIRYIVAAV AAVALVVLAV
LTGVLTADRL SSAVVAITIV AAVAYFVVIL GSKQVSTVER RRVIAFIPLF LVSAVFWSLY
QQQFTVLAVY SDQQLNRDLF GWEMPASWVQ SINPVFIMIL SLVYAGVWTK LGNRQPSSPV
KFALGTIIMG IAFLLFIPMA STVPNSAPLL GLVGVIFVFT NAELLISPIS LSLSTKLAPK
VFETQMVALL FLSIALGTAM SGVLSQYYTI EDQVPYFGIL GCIAIVVGAV LWVFTKPILR
LMGGVR
|
|---|
| |