Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Namu_3458 |
Symbol | |
ID | 8449073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nakamurella multipartita DSM 44233 |
Kingdom | Bacteria |
Replicon accession | NC_013235 |
Strand | - |
Start bp | 3801334 |
End bp | 3802092 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 645042534 |
Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
Protein accession | YP_003202774 |
Protein GI | 258653618 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.00396228 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00386241 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGGCTGCGT CACAGCCGCG GCGGCGCGAG CACGAGGGAT GCGCGCGCCC CGGTTACCGT CGGCGGGTGA ACGCGATCCT GTTCGACCTC GACGGCACCA TCACCGACTC CGCGCCCGGC ATCATCGACT GCTTCCAGCA TGCGCTGGCC GCGGTGGGCT TCCCGCCGGC GGACCAGGAT GTGCTGCGCG GGGTGGTCGG CCCGCCGATC GTGCACACCT TCGAGCGGCT GGGGATGGAC CAGGAACAGA TCCGGACCGC GCGGGCCGCG TACCGGGCCC GCTACGACGA GCGGGGTTGG GCCGAGAATT CCGTCTTCCC GGGGATGGCC GAGCTGCTGG AACGCCTGGG CCGCAGCGGG ATCCCGCTGG GCGTGGCGAC CTCGAAGAAC GAGCGGATGG CCCGGCACAT CCTGCGTCAT TTCGGGCTGG CCGAGCCGTT CGCGTTCATC GGCGGGGCCA GCGACGACGA CACCCGGATC GAAAAGGCCG ACGTCATCGT GCACAGCCTG GGTGGACTGG GCCTGCCGGT GCACCGGGCC GAGGACGGCG GCACCCTGGG CGTGCTGCTG GTCGGCGACC GCAAGCACGA CGTCGAGGGG GCGGCCCGGT ACGGCATCCC GACCGTCCTG GTCAGCTGGG GCTACGGCAC CCCGCAGGAG CGGGCCGGCG CCCGCTGGAG CGTGGACACC CCGGCCGAGC TGGGGGAGTT GCTGGATCAA CTGGTCGGCG ATGTCGTCAC CGGCGGTGCC CAGCACTGA
|
Protein sequence | MAASQPRRRE HEGCARPGYR RRVNAILFDL DGTITDSAPG IIDCFQHALA AVGFPPADQD VLRGVVGPPI VHTFERLGMD QEQIRTARAA YRARYDERGW AENSVFPGMA ELLERLGRSG IPLGVATSKN ERMARHILRH FGLAEPFAFI GGASDDDTRI EKADVIVHSL GGLGLPVHRA EDGGTLGVLL VGDRKHDVEG AARYGIPTVL VSWGYGTPQE RAGARWSVDT PAELGELLDQ LVGDVVTGGA QH
|
| |