| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_1923 |
|---|
| Symbol | |
|---|
| ID | 8447530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 2117764 |
|---|
| End bp | 2118903 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 645041053 |
|---|
| Product | nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_003201301 |
|---|
| Protein GI | 258652145 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0918656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000244242 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGC TGCACACCTC GGACTGGCAC CTCGGTCGCA CCTTCCACGG GCAGAATCTG
CTGCCCGACC AGGAAGCGGT GCTCACCGCG CTCGCCGACC TGGCCGCGGA GCACCGGGTC
GACGCCGTCC TGATCTCCGG CGATCTGTAC GACCGGGCGG TGCCGTCGCC GGAGGCCGTG
CAGACCGCGT CCCGGATCCT GGCCCGGATC CGGGCGGCCG GCATCACCGT CGTCGCGATC
GCCGGGAACC ACGACTCGGC GCCCCGCCTG GGCGCCTTCA CCGACTTCCT GGCCGCCGGC
GGCCTGCACC TGGGCGCCGC GGCCGCCGAC GTCGGCACCC CGGCCGTGCT GCCCGATCCC
GACGGCGACG TCGTCATCTA CCCGATCCCG TTCCTGGAAC CGGATCTGCT GCGCTCCGGA
TGGGCGCTGC CGGCCGGATC CGGGCACGAA GCGGTGCTGG CCCGGGCCAT GGACCTGGTC
CGCGCCGACC TGGCCGCGCG GCCGCCGGGC ACCCGATCGG TGGTGCTGGC CCACGCCTTC
GTCGTCGGTG GCCGCGCCGG CGGATCGGAA CGATCGATCG CGGTCGGCGG GGTGGAGTCG
GTCAGCGCGG ACCTGTTCGC CGGATTCGAC TATGTCGCCC TGGGCCACCT GCATCGCCCC
CAGGTGCTGG CCGACCGGAT CCGCTACTCG GGATCCCCCT TGCCCTACTC GTTCTCCGAA
GCCGATCACG AGAAGGGCGT GTGGCTGGTC GATCTGGACG CCGTCGGCGG GGTCAGCGCG
ACCCGGCTGA CCCTGCCGAC GATCCGCCGG CTGGTCTGCC GGCGCGGCCG CCTGGCCGAG
ATCCTGGACA CCGAGCCCGA TCTGGCCGAT GCTTATCTCT CGGTCGAGCT CACCGATCCG
GTGCGGCCGG TGGACCCGAT GCGGCGGCTG CGGGAGGTCC TGCCCTACAC GCTGGTCGCC
ACCTGGGTCG GCGGTTCCCC GGCGCCGGCC GCGTGGCCGG CCGCCCCCGC GGTCCCGACC
GGCCACGACG ACGCCGACCT GCTGCACGAT TTCGTCCGCG ATGCCTGCGG GCGGCCGGCA
TCGACGGCCG AACGCGACCT GCTGGACGAG GCCCTGCGCG CGTTGCGGAT ACCGGCATGA
|
|---|
| Protein sequence | MRLLHTSDWH LGRTFHGQNL LPDQEAVLTA LADLAAEHRV DAVLISGDLY DRAVPSPEAV
QTASRILARI RAAGITVVAI AGNHDSAPRL GAFTDFLAAG GLHLGAAAAD VGTPAVLPDP
DGDVVIYPIP FLEPDLLRSG WALPAGSGHE AVLARAMDLV RADLAARPPG TRSVVLAHAF
VVGGRAGGSE RSIAVGGVES VSADLFAGFD YVALGHLHRP QVLADRIRYS GSPLPYSFSE
ADHEKGVWLV DLDAVGGVSA TRLTLPTIRR LVCRRGRLAE ILDTEPDLAD AYLSVELTDP
VRPVDPMRRL REVLPYTLVA TWVGGSPAPA AWPAAPAVPT GHDDADLLHD FVRDACGRPA
STAERDLLDE ALRALRIPA
|
|---|
| |