Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Namu_1556 |
Symbol | |
ID | 8447154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nakamurella multipartita DSM 44233 |
Kingdom | Bacteria |
Replicon accession | NC_013235 |
Strand | + |
Start bp | 1716682 |
End bp | 1717971 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 645040683 |
Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003200940 |
Protein GI | 258651784 |
COG category | [K] Transcription |
COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.00576969 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0421989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGACG ACCCCGCTCC GCGCATCGAC ACCGCCCCGC GCATCGGTTC CGTCCCGGCC CGGAGCATCG AGCAGGTGTT CCGGGCCGAG CACGGACGGC TGGTCGCCAC CCTGATCCGT CGCTTCAGCG ACATCGACCT GGCCGAGGAA GCGCTCGGCG ACGCGCTGGT CGTCGCGCTG CAGACCTGGC CCGAGCAGGG CCTGCCGGCC AATCCCGGCG GCTGGCTCAC CACCACGGCC ACCAACCGGG CCATCGACCG GATCCGTCGT GAGTCCACCC GGGACGCTCG GCACCGGCAG GCCAGCGCCC AGACCCTGAC CCAGCACGAC CCGATCGCCG AGCGCGACCG GCAGGAGGAG GAGGTCGGCG TGATCACCGA CGACCGGCTC CGGCTGATCT TCACCTGCTG CCACCCGGCG CTGGCCCCGG AGGCGCGGGT CGCGCTCACC CTGCGCCTGC TCGGCGGGCT GACCAGCACC GAGATCGCGC AGGCGTTCCT GGTCCCGGAG CCGACCATGG CCCAGCGGCT GACCCGGGCC AAGCGCAAGA TCAAGACGGC CGGCATCCCG TACCGGGTGC CGCAGGCGGA GGACCTGCCG GCCCGGCTGG CCGGTGTGCT GGCGGTGCTC TACCTGATCT TCAACGAGGG CTATCTGGCC AGCTCCGGCG ACCAGCCGGT GCGCGACGAC CTGTGCGCCG AGGCGATCCG GCTCACCCGG GTGGTCCGCG GCCTGCTCCC CGACGAACCC GAGGTCGCCG GGCTGCTCGC GCTGATGCTG CTCACCCAGG CCCGGCGGGC CACCCGGGTG GCCGGCGGGG TGCTGGTGCC GCTGGACGAG CAGGACCGGA CGGCCTGGTC CCGGGACCTG ATCGGGCAGG GGCACGAGCT GGTCCGCGAG TGCCTGCGCC GCAACCGACC CGGCCAGTAC CAGCTGCTGG CCGCGATCAA CGCGGTGCAC ACCGACGCGC CGACCGCCGC GGACACCGAC TGGGGCCAGA TCGTCGCGCT GTACGACCAG CTGCGCCGGG TGCACCCGTC ACCGATCGTC GAGCTGAACC GGGCGGTCGC GGTCGCCGAG CTGGACGGTC CGGCGGTCGG GCTGGCCCTG GTCGAACCCC TGGACCTGGC CGGATACCAC CCGTGGCACG TCGCCCGGGC CGATCTGCTG CGCCGGCTCG ACCGGCCGCA GGACGCCGCG GCCGCCTACG AACAGGCCCT GGGCATGACC GAGAACGAGG CCGAACGGGC CTTCCTGCGC CGCAAGCAGC GCGAGCTGAC CGGCCACTGA
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Protein sequence | MPDDPAPRID TAPRIGSVPA RSIEQVFRAE HGRLVATLIR RFSDIDLAEE ALGDALVVAL QTWPEQGLPA NPGGWLTTTA TNRAIDRIRR ESTRDARHRQ ASAQTLTQHD PIAERDRQEE EVGVITDDRL RLIFTCCHPA LAPEARVALT LRLLGGLTST EIAQAFLVPE PTMAQRLTRA KRKIKTAGIP YRVPQAEDLP ARLAGVLAVL YLIFNEGYLA SSGDQPVRDD LCAEAIRLTR VVRGLLPDEP EVAGLLALML LTQARRATRV AGGVLVPLDE QDRTAWSRDL IGQGHELVRE CLRRNRPGQY QLLAAINAVH TDAPTAADTD WGQIVALYDQ LRRVHPSPIV ELNRAVAVAE LDGPAVGLAL VEPLDLAGYH PWHVARADLL RRLDRPQDAA AAYEQALGMT ENEAERAFLR RKQRELTGH
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