| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_0054 |
|---|
| Symbol | |
|---|
| ID | 8445633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 63184 |
|---|
| End bp | 64722 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 645039205 |
|---|
| Product | PTS system, mannitol-specific IIC subunit |
|---|
| Protein accession | YP_003199481 |
|---|
| Protein GI | 258650325 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2213] Phosphotransferase system, mannitol-specific IIBC component |
|---|
| TIGRFAM ID | [TIGR00851] PTS system, mannitol-specific IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 68 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAGCTG ACGCGAGCGC AGCCGGAACC ACCAGCAAGA CGTCGAGTAC CCGAGTAGCG
GTCCAGAAGT TCGGCACGTT CCTGTCCGGG ATGATCATGC CCAATATCGC GGCGTTCATC
GCGTGGGGTT TGATCACTGC TCTGTTCATC GAGAAGGGGC CGTTCCCGAT CGCGGTGATC
GGCGGGTTCG GGGTGGACGA CGCGGGGGAT CCGAATCCGG GGTTGGTCGG GCCGATGGTC
CGGTACATGT TGCCGATCCT GATCGCGGCG CAGGGCGGCC GGATGATCTA CGGGGTGCGG
GGCGCGGTGG TCGCGGTCGT CGCGACGATG GGCGTGATCA TGTGCACGCC GCAGCCGATG
TTCCTCGGCG CGATGGTGAT GGGCCCGTTG GCGGCCTGGT TGATGAAGAA GTTGGACTCG
GTCTGGGACG GCAAGATCAA GCCCGGTTTC GAGATGCTGG TCAACAACTT CTCCGCGGGT
TTCCTGTCCG CCGGTTTGGC CATCGCCAGC TTCTACGTGT TCGGGCCGAT CATCGAGGGT
CTGTCCTCGG CGTTGGGTAC CGGGGTGGAC TGGCTGATCT CGCACAGCTT GTTGCCGCTG
GCCAGTTTGA TCATCGAGCC GGCCAAGGTG TTGTTCCTGA ACAACGCGAT CAACCATGGG
GTGTTGACCC CGCTGGGGAT CAACCAGTCG GCCGAGACCG GGCAGTCGAT CCTGTTCCTG
CTGGAGGCCA ACCCCGGTCC GGGTGTCGGT CTGCTGATCG CGTACTCGAT CTTCGGGACC
GGTCTGGCCA AGAGCACCGC CCCGGCCGCG GCGATCATCC AGTTCTTCGG CGGGATCCAC
GAGATCTACT TCCCGTACGT GCTGATGAAG CCGCTGACCC TGATCGCGAC GATCGCCGGC
GGCATGGTCG GCATCTTGAC CCTGACCATC TTCAACGCCG GTCTGCGGGC GCCGGCCGCG
CCCGGGTCGA TCATCGCGGT GTTGATCCAG ACACCGGGCA GCAGCCTGGT CGGGGTGTTG
TTGTCGGTGA CGTTGGCCGC GGTGACCAGT TTCGTGATCG CCTCGATCAT CCTCAAGGCC
AGTAAGAAGA CCGAGGAGAG TGGTGATCTC GCGCAGGCCA CGGCCAAGAT GGAAGGGATG
AAGGGCAAGA AGAGCGCTGT TTCCGGGGTG CTCACCGACA TCGAGGCGCA GAAGGAGGAG
GCCGACGAGG CCCGCGAGGC CGCGACCCGG TCGGCGCCGA TCCACAAGAT CGTGTTCGCC
TGCGACGCCG GGATGGGTTC GTCGGCGATG GGTGCCTCGG TGCTGCGGAA CAAGATCAAG
AAGGCTGGGT TCGCCGACAT CACCGTGGTC AACGTGGCCA TCGCGAACCT GGTCGACGAT
GTCGATCTGA TCGTGACCCA TCAGGACCTG ACCGCCCGGG CTCGGGACAA GGCCCCCCAC
GCCCAACACG TCTCGGTGGC CAACTTCATG AACAGCCCCA AGTACGACGA GATCGTCGAC
GAGCTGCACG TCACCAACCC GCAGGGCAGT AGCGCCTGA
|
|---|
| Protein sequence | MTADASAAGT TSKTSSTRVA VQKFGTFLSG MIMPNIAAFI AWGLITALFI EKGPFPIAVI
GGFGVDDAGD PNPGLVGPMV RYMLPILIAA QGGRMIYGVR GAVVAVVATM GVIMCTPQPM
FLGAMVMGPL AAWLMKKLDS VWDGKIKPGF EMLVNNFSAG FLSAGLAIAS FYVFGPIIEG
LSSALGTGVD WLISHSLLPL ASLIIEPAKV LFLNNAINHG VLTPLGINQS AETGQSILFL
LEANPGPGVG LLIAYSIFGT GLAKSTAPAA AIIQFFGGIH EIYFPYVLMK PLTLIATIAG
GMVGILTLTI FNAGLRAPAA PGSIIAVLIQ TPGSSLVGVL LSVTLAAVTS FVIASIILKA
SKKTEESGDL AQATAKMEGM KGKKSAVSGV LTDIEAQKEE ADEAREAATR SAPIHKIVFA
CDAGMGSSAM GASVLRNKIK KAGFADITVV NVAIANLVDD VDLIVTHQDL TARARDKAPH
AQHVSVANFM NSPKYDEIVD ELHVTNPQGS SA
|
|---|
| |