| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2482 |
|---|
| Symbol | |
|---|
| ID | 8420344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2847866 |
|---|
| End bp | 2848732 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645039085 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003199342 |
|---|
| Protein GI | 258406600 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.162526 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATCCCT TGCGCTGCCT TCTTGCCCAT CCGGTTTCTG AGATCCGGCA GACGCTGCGC
GACCATTGTC AGCGCGTGGC CTGGCTCCGT GTCGTCGGGG AGGCTGCCCG GGCCAACGAG
GCCCTGGAAC TCGCCCAGAA CATGGCCTAC AACGCCCTAT TCCTTGCCCC CGGACCTATG
GGGGAGTGTA CCGGACTGGA ACTCGCGCGT CTTCTGAAGA CCATGCCCTT GCCGCCGGCC
CTGCTCTTTG TCGCCACGAC CCAGGATCAG GCCTTGGAAG CCTTTGAGCT CGGTGCCCTG
GACTACTTCC TCTGGCCCGC TTCAACCGAA CGACTGGACC AGTGCCTGGA AAAAATACGC
CGCATACCTC CGCCTCCCCA CGCTGTCCAG AACACGACTG CAGGAAACAA CGCGCCGCGC
CCCGCGCATA AGCGCGAAAC ACTGCGACTC GATCTCGGTG ATGACGACGA AGAGCACTTT
GTTGAAGCCC TCAAGGCGAC CTGGAGCGAA CCGCTGGCCA CGTCTGCGCA GAGGCCGGAC
AAACTTCCGG TCCAAAGCGC GGGCAAAACC CTGCTCATTC CCTATGTGCA TATAATCTTT
ATTGCTGCCG AAGACGACTA CTGCTTCGTC CACACCAGTT CAGGCAAATA CTTGAACGCC
TCCCGGCTCA AAAATCTGGA AGAACGTCTT GCCCAGCACC GTTTTTTCCG AATCCACAGA
AAATACCTGG TCAATCTTGA TATGGTCACA GAGGTCGCCA GCATGCCCGG AGCGAACCTC
ATGCTCCGCA CAGCAGGCAC GCCGCGAATC GAACTCCCGG TGAGCCGGCG GCGCATCCAG
GAATTGAAAT CGCTTTTGGG GCTTTAA
|
|---|
| Protein sequence | MYPLRCLLAH PVSEIRQTLR DHCQRVAWLR VVGEAARANE ALELAQNMAY NALFLAPGPM
GECTGLELAR LLKTMPLPPA LLFVATTQDQ ALEAFELGAL DYFLWPASTE RLDQCLEKIR
RIPPPPHAVQ NTTAGNNAPR PAHKRETLRL DLGDDDEEHF VEALKATWSE PLATSAQRPD
KLPVQSAGKT LLIPYVHIIF IAAEDDYCFV HTSSGKYLNA SRLKNLEERL AQHRFFRIHR
KYLVNLDMVT EVASMPGANL MLRTAGTPRI ELPVSRRRIQ ELKSLLGL
|
|---|
| |