| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2424 |
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| Symbol | |
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| ID | 8420284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2773774 |
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| End bp | 2776218 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 645039025 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_003199284 |
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| Protein GI | 258406542 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.700417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000025063 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAACTCAT GGGTCGCGAA CTCAAGGACG AATAGGCCGT TTCTCTGCCT GCTGCTCGCC
AGCGTTATTC TGGTCCTGTG CTGTACCTCG GCCCGTGGGG CGCCGGAACA ATTGGCCGTG
ACCCTTGTCC ATGACGGGCC GGGACACGGC GAAACGGCCT TTGCCTCGCA ATTGAAACAG
GAAACCGCCA AGCTGCTTGC TCCGGAAATC TCTCTGGAGT GGAGGACTGA ACCGGCCTCC
GCCTCGAGCC CGGAGGCGAT CCAGCACGCC CTGAATCGCG CATTGGGCGC CCCAGGCACG
GACATCGTGG TCACCAGCGG ACCGCTGGGA ACTCTTGCGG CCGCCCGCGC CCGGGAACAC
TTGGCCAAAC CGGTTTTGGG CCTGCTGGAG GTTGCTTCCA GCCTGTACGG CCTCTCTCAG
AAAAATCCTG GCGTGTCGGA CCGAGGCAAC CTGAATTGTA TCGCCCCCAC CGGGAAGCTG
CAACGTGATC TGACTGCTTT GCGCCGGCTC GGCCACACCT CCGCCATCAC CTGCCTGTTC
GACGCGGCCC TGCTCCGTGC GGTCCCCGGA TTTGCTCCAC ACCTTAGAGC CCTCGGCCGG
GAGCTTGATC TCCAGATCAA GGTCATCCCG GTTGCGGATT CACCGAACGC AACAATCCAG
GAGCTTCGAG ACGCAGCCCC GGGCGCGCTC TATCTCGGCT CCACACCGCA ATGGGGAGCG
CAAGACCGCG CCGTTTTTTT TCGCGCTTGC ACCGTCCAAC ACTGGCCGGT CGTTTCCGGC
GGGGGTCGCA AGGACGTTGT CGCTGGGGCC TTGGCGGCGC ACGCCGGCCC CGCTCCGGCC
CGCATCGCCC GCCGGATGGC CTTGAACATC CAGGCAGTGC TCCAGGGCGA GCTGCCGGGT
GAACTGCCCA GGGAATTGGG CGCCCACGGC CGGCTGTGCG TCAATGCCTC CACAGCCCGG
CACCTTGGCA TTCCAGTTTC CCGGGCCGCG GCCCTGTCCG CAGAGATCCT GCACGACCCG
CCTTCCTCAG ACGTGCCGCG GTTGACCCTG CCGCAGGCCC TCAACCTGGC AGCGCGCCAC
AACCCGCAAC TCATGGAACA AACGGCCCGC GTCGCAGGGG CCCGAGGCCA GTCCGGTCAA
GCCAGGGCCG CTTTCCTGCC CCAGGTTTCC GGGTATTGGC AAACAACGCA TATCGACCAG
GACCGTTCAG AGGCCTCCCT CGGGATGCAG CCGTGGCGCA GGGCCTCGGC CGGATTCACC
GTTCGCCAGA ACATCTTCAA TGATCCCCTG TTCACCCAGG CGGCAGCAGC GGAGCAAACC
GTCAAGGCCA GGAAACAGGA ACAGTCCCGG GCGCGACTGG ATGTGCTTGC TGCGACCGGA
CGGGCCTATC TGAATGTCTT GCGGGCCCAA GCAGTACTGG AGAGCGCCAA GCGCAACCAC
GCCCTTACCC TGGACCACCT TGAACTCGCC CGGGCCCGAC GGCGGGCAGG GGCCTCCGGT
CCGCAGGACA TCTACCGCTG GGAGGCCCAG GAGGCCGAAC AGCAAAGTGC GGTGCTCAAA
GCCCGGACCG GAGTTGCTCA GGCCCGGTTG GCATTGAACA GGGCCCTCGG CCAGCCGCCG
CAGACATCGT GGACCGCGGC CGACCTCAGT CTACAGGACA GACTCCATTT TCTGGCCCCC
TTCTTCCCGG CAGACGGGGC CGTGCCCCAG ACCTTGCAGG CCTTGATCGC CCAGGCCGAG
GACACGGCCT TGGAGCAATC CCCCTCCCTG AACGCCCTGG AAGCCCTGCT GCATGCGGGA
CGACTGCGGC GGGACCAAAA AAAACGGGCT TTTTTTGCCC CTGAAATCAC GGCTTCTTTT
GAGTTTGAGC ACGAATTGAC CAGTGAGTCC GAAAGTTGGG ATCCCCCGCA GGGGATGCGG
CTGGACCTGC CGCAGGCCAA CAAGGACGAT TGGACCCTGG CCCTGAGGGC CAGGGTGCCG
CTGATCACCG GGGGAGAGCG CGGCCATGCC CTGGCCGAGG CCCGGGCTGT GCTCGCCCGC
CTTGCAGCCC GGCGCCGGGG CATACGCCAA CAGATCCAGG AGGAGGTCCG CAGGGCGGTC
TACGCCCTGG AAAGCTCCCG GCCCCGCATC CATCTGGCCC GGCGGGCCGC CGACCGCGCG
GACAAGAATC TCCACGTTGT GCAGGCAAAA TATGCCCGAG GCACGGCCTC TCTGGTCGCC
CTGCTCGACG CACAGCACAA CGCTGTCACC CAGCAAAAAA AGGCGGATCT CGCCCTGTAC
GCGTATTTCG AGGACCTTGT CGCCCTGCAA CGGGCCATGT CCTGGTTTGC CTGGACCGCC
CCGCAACAGA GCGCACAGCA ATGGCTGCGA ACCCTGCAAC GCCGGGCCTC GAAAACGGCA
GCGCCCGCCT CGCAGTCCCG CTCGGCCTCC CCGCTGCAAC CCTGA
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| Protein sequence | MNSWVANSRT NRPFLCLLLA SVILVLCCTS ARGAPEQLAV TLVHDGPGHG ETAFASQLKQ
ETAKLLAPEI SLEWRTEPAS ASSPEAIQHA LNRALGAPGT DIVVTSGPLG TLAAARAREH
LAKPVLGLLE VASSLYGLSQ KNPGVSDRGN LNCIAPTGKL QRDLTALRRL GHTSAITCLF
DAALLRAVPG FAPHLRALGR ELDLQIKVIP VADSPNATIQ ELRDAAPGAL YLGSTPQWGA
QDRAVFFRAC TVQHWPVVSG GGRKDVVAGA LAAHAGPAPA RIARRMALNI QAVLQGELPG
ELPRELGAHG RLCVNASTAR HLGIPVSRAA ALSAEILHDP PSSDVPRLTL PQALNLAARH
NPQLMEQTAR VAGARGQSGQ ARAAFLPQVS GYWQTTHIDQ DRSEASLGMQ PWRRASAGFT
VRQNIFNDPL FTQAAAAEQT VKARKQEQSR ARLDVLAATG RAYLNVLRAQ AVLESAKRNH
ALTLDHLELA RARRRAGASG PQDIYRWEAQ EAEQQSAVLK ARTGVAQARL ALNRALGQPP
QTSWTAADLS LQDRLHFLAP FFPADGAVPQ TLQALIAQAE DTALEQSPSL NALEALLHAG
RLRRDQKKRA FFAPEITASF EFEHELTSES ESWDPPQGMR LDLPQANKDD WTLALRARVP
LITGGERGHA LAEARAVLAR LAARRRGIRQ QIQEEVRRAV YALESSRPRI HLARRAADRA
DKNLHVVQAK YARGTASLVA LLDAQHNAVT QQKKADLALY AYFEDLVALQ RAMSWFAWTA
PQQSAQQWLR TLQRRASKTA APASQSRSAS PLQP
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