| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2333 |
|---|
| Symbol | |
|---|
| ID | 8420193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2653786 |
|---|
| End bp | 2655522 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038935 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_003199194 |
|---|
| Protein GI | 258406452 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAA AGACATCCTG CCAGGCGCTT CTTCAGGATT TGCTGGAAGA ACGGGAAACA
CCCTGGCAAA TCCAGCAACG ACTTTTTTCG CGCAAGGAAT TTCTGGAAAC CGTCCTCTAT
CAGGCACCGG ACGCGATCGT CACCCTGGAC ACCACCTACA GGGTGGTCGA CTGGAATGCG
GCCGCCGAAC GCATTTTTGG ATACAGCCGC GAGGAAGCCT GCGGGCATGA ACTCGATTCA
CTGATCACCT CTGCGGAAAC GGCCAGTGAG GCCAAATGCC TCTCCAGACA ACTGCTCGAC
CAGCAGCCGG TAGTGACCAC AGAAACCGTG CGCTTCACCA AATCGGGAAC TCCCGTGCAG
GTCCGCGTCT CCGGAGCCCC CATCGTCACT GACGGAACGC TCCACGGGAT CGTCGCCGTT
TATACCGACA TTTCCGAGCG CATAGCGACC GAAGACGCCT TGCGAGAACA AAAACGCGCT
GCCGAACAAG CCCACGGACA ATGGCAGCGG ACCTTTGACG CCGTTCCCGA CCTTATTGCC
CTGATCGACA CCGACCACCG CATTATCCGC ACCAATCGGG CCATGGCCGA ACGCCTCGGC
CGCCCGGCTG CAGAACTCAC CGGTTGTGCC TGCCATACGG TGGTCCACAA TCGGGAGACA
CCTCCGGCCT TTTGTCCCCA CAGCCAGCTT CTGGATGAGG GAGATTCTTC CCCTGTCGAA
ATCACCGAAG ACAATCTCGG CGGCGATTTT TTGATCACTG TCACGCCGCT GCACGACGCA
GAGGGCCGCC TTTTGGGCAG CGTGCATATC GCCCGGGACA TCACCAAGCG CAAGCGCGAT
GAAAAGCGGC TTGCAAAGAT GTCCAAAGAA TTCGAACAAG TATTCCACGG CACCCAGGAC
GCCATGTTCC TCATCGCCGT GGAGGAAGAA GGCGGCTTCC GGTTCATACG CACCAACAAG
GCCCACCAGA GAGCCACCGG TCTGGAACTC AAGACGGTTC GGGGCAAAAC GCCTCTGGAA
CTGCTCGGTG AGGAGGCCGG GGCGCAGGTC AGTGCCAACT ACCAGCGGTG TGTTGATGCC
GGGGCCCCCC TTTCCTATGA GGAAGAACTT GTCCTCCCGG GGGGCACCAG GGTCTGGCAC
ACGACCTTGA CCCCGGTATA CGAGGAGGAG CGGATCACCT CCATCGTCGG CTCCGCCCAG
GACATCACTG AACGCAAACG CGCCGAGGAG CACCTGCGCT ATCTGGCCAC CACCGACGAA
CTCACGGGGC TGTATAACCG ACGCCATTTC ATGGAAATTT TGGACACCGA GATTGAGCGG
GCCAAACGCT ACGAACAAAG CTTGGCCTTG ATCTCCCTGG ACATCGACCA TTTCAAGACT
ATCAATGACA CGCATGGCCA CGCCGTGGGC GACGCCGCGC TGGAGCATCT TGCGGCCCAG
CTTTTGGCCT GCAAGCGCCA ACCCGACAGC CTGGGACGCC TCGGGGGCGA AGAGTTCGCG
CTTATCGCCC CGCACACCGA CCGTGCCGGA GCGACCGAGT TGGCCGAACG TATCCGGAGC
GAACTCGAAC GGACTCCCAT CGAGTTGGAG TCCACCAGCT TGCATCCGAC CATCAGTCTC
GGCGTCACTG CATTGAACAT CCAGGACAAC GACACCATCG ACGCCCTGCT CAAACGCGCC
GACGACGCCC TCTACGAAGC CAAACGCACC GGACGCAACC GCACGGTTAC CTCCTGA
|
|---|
| Protein sequence | MTEKTSCQAL LQDLLEERET PWQIQQRLFS RKEFLETVLY QAPDAIVTLD TTYRVVDWNA
AAERIFGYSR EEACGHELDS LITSAETASE AKCLSRQLLD QQPVVTTETV RFTKSGTPVQ
VRVSGAPIVT DGTLHGIVAV YTDISERIAT EDALREQKRA AEQAHGQWQR TFDAVPDLIA
LIDTDHRIIR TNRAMAERLG RPAAELTGCA CHTVVHNRET PPAFCPHSQL LDEGDSSPVE
ITEDNLGGDF LITVTPLHDA EGRLLGSVHI ARDITKRKRD EKRLAKMSKE FEQVFHGTQD
AMFLIAVEEE GGFRFIRTNK AHQRATGLEL KTVRGKTPLE LLGEEAGAQV SANYQRCVDA
GAPLSYEEEL VLPGGTRVWH TTLTPVYEEE RITSIVGSAQ DITERKRAEE HLRYLATTDE
LTGLYNRRHF MEILDTEIER AKRYEQSLAL ISLDIDHFKT INDTHGHAVG DAALEHLAAQ
LLACKRQPDS LGRLGGEEFA LIAPHTDRAG ATELAERIRS ELERTPIELE STSLHPTISL
GVTALNIQDN DTIDALLKRA DDALYEAKRT GRNRTVTS
|
|---|
| |