| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2188 |
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| Symbol | |
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| ID | 8420044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2489165 |
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| End bp | 2491570 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645038787 |
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| Product | diguanylate cyclase and serine/threonine protein kinase with TPR repeats |
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| Protein accession | YP_003199050 |
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| Protein GI | 258406308 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.73077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAG CCACTCACGA ATCGCTTTCA CCTCCCTTGC TGCCGGTCCA GGCCCAGGAC
CTGCTCCACT ACCAGAACAT GCTTTTTTCC AGCCTTGGCG AAGCGGTCTC GTTTACTGGT
CCCAGACTCT ATTTTCCGGC AGCTGAAAAA AAAGCGGACC CGCTGTATTG CACGCCCCGA
TACGAGGCCG AGGCCCGGCG TTTATTTTTG CCCCTGCTTC AAGGCGACGA ACCCTTGGCC
CTGTTCGTGG CTTCAGATGT CGAGTTGGAC CACCCTGAGG CCGTGCTGCC CTATCTGGCG
ATGTTGGCCA AATTGTGCGT GGAAAAAATT GCCCTCAGAA AGATGACAAG TCTGGACCGG
CTGACAGGCC TCTTCAACGC CGAGGCGCTG GGACAGCTCC TGGAGCAGGA GATCGAACGT
GTCCTGGCCA CCCTCAGCCC CGGCTCCGAG TCCGCCTTGG AAGAAACCTT CAGCGGGCAC
AGCGCCAGTG TGGCCCTGAT TCTTGTCGAG CCCGATGCGA TAAGCCGGCT CAACACCCGC
TACGGCCCTC TTTTTGGAGA CCAGGTTCTG ACCAAAACGG CCGAGACCTT ACGGGAATTG
GCTCCTGAAG GTGCCATCCT GGGCCGGGAC AAACAGCGAT TTTATATGCT TTGGCCACAG
GCGAGCGGGC GGCGGTGCCG CCAATTGGCG TCCCACCTCC GCCTCCACTT GGCCGGGATG
GTGCTGACCC ACGAAGCCAC TGGAGAGGAG ATCGCTGTTT CCGCAAGCAT CGGCCTCGCG
CTTTTCCCCC AGGATTTTCT GGGATGGGAG TTGCAGGGGC ACGGCCGGGA ACAAAGCCGG
AGCCTGCAGA AAAAAAGCCG CAAGGCGCTC AAGTCCGCCC AGAAGGAGGG CGGCAATCAG
ATCTACGCCT TCCAGGACCT GCTGGCCAGA GGATGCAGCA TCCTGCGGGA GCTGCCCCTG
AACCGTTTTC TGATCGACGC CGGCCGTGAC ATCGGGGCCA GCGAAGGGCA GCATTTTCTC
GTCTGGCCGC CGGACAGTCC AGAGACCACC GAGGACTCCG ATCCTCTCCC CACGCCGAAA
GGTGAGGTCG TGCTGGTGGA TATCCTCGAA GAACAAAGCG TGGCCGAAAT CATCAATCAG
GACGAACCCG CCTGGACGTT GACCACCGGG GACCGGCTCA CCCTTTTGCC CGACTTGCAG
GAGCAGCCAA CCTCTGCGGA CACGCCCCAG AGCCAGGAAA CATCCACCCT GGCCGGCCTG
CCCTCCTTGC GGGAATTCCT CAAGATCTGG AGTCGGCAGC GCGGCAGTCA CTCCTCGTTT
ACTCTCCTCC TGTTCGGCAA CCTCGGGTCT CCGACCCCGA ATGATTCCAA ACAGGCACGG
GAAAACCAGC GGCACCTCCA GGCCACTGCG GCCTGGGTCA GCCGATTTCT CCCGGAGAAC
CACCATATCG CCCGGCACAG TACCAACAGC CTGGTGGCCT TTGTGCCCCA ATTGGACGCC
GAGCAGGCCC GAGGCCTGGC GCACAGCATC GTCGAACACG GCAGACACGC CCGGGAGTTG
GACATCTCCG CCGGAGTGGC CGCCTATCCC TGTCTGGACG CCGGGCGGGC CGACATCCTC
TCCCATGCCC GCAAGGCCCT GGAACACGCC AGGCTCCTTC CCGTCCCACG CATCGCTACC
TTTGATTCCG TTTCCTTGAA CATCAGTGCC GACCGCCAAT TCACCAAAGG CGACCTCTAC
GCGGCCATGG AGGAATACCA GAAATCCCTC GCCCTGGATC CGGCCAACAC CACAGCCCGG
AACTCTCTTG GAATTTGTTT CGCGCGGCTG GGCAAGCACA GCGCAGCTCG CAAGGAATTC
GAGGCCATAC TCGAGCAGAC CCCGGACAAT CACATCGCCT TATACAATCT CGGCTGTCTG
GCCATGAAAG AAGGGGAGAC AGAGGCCGCA GAGGCGGCCT TGCACCGCTG CCTCTCCCTC
TGTCCAGAGC ACGTCTACTC CCGGTTACGC CTGGGCCAAC TGGCCGAGAC GCGTCATGCC
CTCACTGAGG CCCGCAAGCA TTTTGCCGCA GCAGCGGCGC ACAGCGATGG GGAGCCCATC
AGTCACCGCC ACCTGGCCCG CTTGGCTGTC AAAGAGGGAC ATCCGGACAG GGCCAGGGAA
CATCTGCACA AGGCGCTGGC GCACAATCCC CGGGACGCCT ACGCCATGCA TCTCCTGGCC
CGGCTGTATC TCGAAGCCGA AGAGAACCTG GAGGTCGCCG CAACGCTGGC CCGGGAAAGC
GCCCTGAACC AGCCCGAGCG CGGCGAATAT TGGGATCTCT GGCGAGATAT CCTCCGCCAA
CAGGGCGAGG ATGAGCGTGC CGCAGCCATC CAGACCCGCC ACCCTTCGCC CTTTTCCGCT
TCCTGA
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| Protein sequence | MSQATHESLS PPLLPVQAQD LLHYQNMLFS SLGEAVSFTG PRLYFPAAEK KADPLYCTPR
YEAEARRLFL PLLQGDEPLA LFVASDVELD HPEAVLPYLA MLAKLCVEKI ALRKMTSLDR
LTGLFNAEAL GQLLEQEIER VLATLSPGSE SALEETFSGH SASVALILVE PDAISRLNTR
YGPLFGDQVL TKTAETLREL APEGAILGRD KQRFYMLWPQ ASGRRCRQLA SHLRLHLAGM
VLTHEATGEE IAVSASIGLA LFPQDFLGWE LQGHGREQSR SLQKKSRKAL KSAQKEGGNQ
IYAFQDLLAR GCSILRELPL NRFLIDAGRD IGASEGQHFL VWPPDSPETT EDSDPLPTPK
GEVVLVDILE EQSVAEIINQ DEPAWTLTTG DRLTLLPDLQ EQPTSADTPQ SQETSTLAGL
PSLREFLKIW SRQRGSHSSF TLLLFGNLGS PTPNDSKQAR ENQRHLQATA AWVSRFLPEN
HHIARHSTNS LVAFVPQLDA EQARGLAHSI VEHGRHAREL DISAGVAAYP CLDAGRADIL
SHARKALEHA RLLPVPRIAT FDSVSLNISA DRQFTKGDLY AAMEEYQKSL ALDPANTTAR
NSLGICFARL GKHSAARKEF EAILEQTPDN HIALYNLGCL AMKEGETEAA EAALHRCLSL
CPEHVYSRLR LGQLAETRHA LTEARKHFAA AAAHSDGEPI SHRHLARLAV KEGHPDRARE
HLHKALAHNP RDAYAMHLLA RLYLEAEENL EVAATLARES ALNQPERGEY WDLWRDILRQ
QGEDERAAAI QTRHPSPFSA S
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