| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2176 |
|---|
| Symbol | groEL |
|---|
| ID | 8420027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2473141 |
|---|
| End bp | 2474790 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645038770 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_003199038 |
|---|
| Protein GI | 258406296 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.901834 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCGA AGACCATCAA ATTTGGCGTA AAAGCCCGCG AACAGCTGCA ACAGGGTGTG
GACCAACTGG CTCAGGCCGT AAAGGTCACC CTTGGCCCCA AAGGCCGTAA TGTCGTTATT
GAAAAGTCCT TCGGTTCCCC CACGATCACC AAGGACGGTG TCACCGTTGC CCGCGAGATC
GAACTCGAGG ACAAGTTTGA AAATATGGGC GCTCAGATGG TCAAGGAAGT GGCCAGCAAG
ACCAGCGACG TTGCTGGTGA CGGCACCACC ACCGCCACAA TCCTGGCCCA GAAAATTTTC
AGCGAAGGCT TGAAGCTTGT TGCCGCCGGC CGGAACCCCA TGGCCATCAA GCGCGGCATC
GACAAGGCCG TTGAAGCCAT CAACAAAGAA TTGGCCGACT TCGCCAAGCC GACCCGCGAC
CAGAAAGAGA TCGCCCAGAT CGGCACTATC TCCGCCAACA ACGATCCGAC CATCGGCAAC
ATCATTGCCG AGGCCATGAA CAAGGTTGGC AAGGAAGGCG TTATCACCGT GGAAGAGGCC
AAGGGCCTGG ACACCACCCT GGACGTGGTC GAAGGCATGC AGTTCGACCG CGGCTACCTC
TCCCCCTATT TCGTGACCGA CTCCGAAAAA ATGGTTGCCG AGTTGGAAGA TCCGCTCATC
CTCATCAATG AGAAGAAGAT CTCCAACATG AAAGACCTCC TGCCCGTGCT GGAGCAGGTG
GCCAAAATGA ACAAGCCGCT GATGATCATC GCCGAGGAAA TCGAAGGCGA AGCCCTGGCC
ACCCTCGTGG TCAACAAGCT GCGCGGCACC CTGCAGGTCG CTGCGGTCAA GGCCCCCGGC
TTTGGCGAAC GCCGTAAGGC CATGCTCCAG GACATCGCCG TTTTGACCGG CGGCAGCGTC
ATTTCCGAAG ATGTGGGCAC CAAGCTTGAA AATGCCACGG TCAACGACCT CGGCAGCGCC
AAGCGCATCA ACATCGACAA AGAAAACACC ACCATCGTGG ACGGCGCTGG CTCCTCCGAC
GACATCAAGG CCCGCATCAA GCAGATCCGC GCTGAGATCG ACGAAACCAC CTCCGATTAC
GATCGCGAAA AGCTCCAGGA GCGTTTGGCC AAGATCGTCG GCGGTGTGGC CGTGATCAAT
GTCGGCGCTG CGACCGAAAC CGAAATGAAA GAAAAGAAGG CCCGCGTCGA AGACGCCCTG
AACGCTACCC GCGCTGCCGT TGAAGAAGGC ATCGTGCCTG GTGGCGGCGT GGCCTTCATC
CGCACCCAGC ATGCCGCTAA TTCCGTCAAA CCGGCCGACG AAGACGAAAA GGCCGGTGTC
GATGTGGTCC GCGCCGCTGT GGTCGAACCC CTGCGTCAGA TTTGCGCCAA TGCTGGCTTC
GAAGGCGCCT TAATCGTGGA AAAAGTCCGC GAGCACAAGG ACGGCTACGG CTTTAACGCC
GCCACTGGCG AATTCGAAGA CCTGCTCAAG GCCGGTGTCA TTGATCCTAA AAAGGTCTCC
CGCACCGCCC TGCAGAACGC CGCTTCCGTC GCCTCCCTCT TGCTGACCAC GGAAGCTGCC
ATTGCCGACA AACCTGAAGA CAAGGACAGC GGTGGCGCTC CTGCCGGTGG CGGTATGCCC
GGCATGGGCG GCATGGGCGG CATGTACTAA
|
|---|
| Protein sequence | MAAKTIKFGV KAREQLQQGV DQLAQAVKVT LGPKGRNVVI EKSFGSPTIT KDGVTVAREI
ELEDKFENMG AQMVKEVASK TSDVAGDGTT TATILAQKIF SEGLKLVAAG RNPMAIKRGI
DKAVEAINKE LADFAKPTRD QKEIAQIGTI SANNDPTIGN IIAEAMNKVG KEGVITVEEA
KGLDTTLDVV EGMQFDRGYL SPYFVTDSEK MVAELEDPLI LINEKKISNM KDLLPVLEQV
AKMNKPLMII AEEIEGEALA TLVVNKLRGT LQVAAVKAPG FGERRKAMLQ DIAVLTGGSV
ISEDVGTKLE NATVNDLGSA KRINIDKENT TIVDGAGSSD DIKARIKQIR AEIDETTSDY
DREKLQERLA KIVGGVAVIN VGAATETEMK EKKARVEDAL NATRAAVEEG IVPGGGVAFI
RTQHAANSVK PADEDEKAGV DVVRAAVVEP LRQICANAGF EGALIVEKVR EHKDGYGFNA
ATGEFEDLLK AGVIDPKKVS RTALQNAASV ASLLLTTEAA IADKPEDKDS GGAPAGGGMP
GMGGMGGMY
|
|---|
| |