Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_2139 |
Symbol | |
ID | 8419989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2438552 |
End bp | 2440204 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 645038732 |
Product | membrane protein insertase, YidC/Oxa1 family |
Protein accession | YP_003199001 |
Protein GI | 258406259 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.122675 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGACA ATACCAAGCG CGTCATCGTG GCCGTAGTTT TGAGTTTCAT AGTCATCGTT GGCTGGAATT TTCTTTTCCC TCCCCAACAG CCCCCCACCC AATCGAATCA AGCAGCGAAC CAAACCCAGC AAGAGACGCC CACTGTCGCT GAGGACTCCA GTTCCCAAGT CCCGGGAGCG AGTCAGACGG GCGACGGTGT CGTGGCTGGC CGGGCGCAAC AAAGCCTGAG CGGGTCGACC TATTCGCCGG AGGGATCCGG CAAACGGGTG ACGGTGGAAA CCCCCCTGTA TAAGGCGACG ATCAATGCCG CCGGCGGTGT CCTCGAACAT CTGGTACTCA AACAGTACCA GGAGGCCATC AACCCCGGTG CGAAAAATGT GGATCTCATC ACCAGGGGCA CAGTGCAAAA AGCGCCCATG GGCTTGATCT GGCAGCAACG TCCGACCTGG AGCGAGGCCG ATTGGGAGTT GCAAGGAAAT GATCTTCAGC TCGGCCAAGG GGAAAGCGGC TCTTTGACCC TGGTGGGAAC CATTGACGGT GTTCGTCTCG AACGGACCCT GCATTTCTCG GCCGAGACCT ATCTGATCGA CGAGACGCTC AATGTCGCCA ATGCCCGGGA CCATTCCCTC ACTGGAACGG TGTCCTTTAC CATGGCCAGT GAGCAGCTTG CCGAAGAGAG CCGCTACAAC CGCACCGAGC TTATTTATTT CAATGGCGGA CTGAACAAGG AAAGTGACAC CGACGAACTC CAGATCGGTA TCCATCCCGC CGAAACAGTC TCCTGGGGCG GTATTGCCAG TAACTATTTT TTGCTCGCCG CCGTACCGAC GTCTGGCAAT ATGGACCTGC GCGGGAAATA CGAAGACGAG ATCTATCGTG TGGCTTTGGG CAGCCAGGTT GCCGTAGCGC CTGAGCAGAG CGCGGAGCTG TCCTGCAGTT ACTATGTCGG GCCTAAGGAA AGCGAGCAGT TGGCCCAGGC CCCCCAGAAT CTTTTGGCCG CGATCCAGTA CGGCTGGTTC GATTTTATCG CCAAGCCGCT TATCAAGGTC TTGAAATTCT TTTATTCCTA TGTCGGCAAC TACGGTGTGG CCATCATTCT CCTGACGATC CTGATCAAGA TTGTTTTCTG GCCTTTGTCT CAGAAAAGTT ATAAGTCCAT GGAGAAAATG AAGAAGCTGC AGCCGATGAT GACGCAGCTC AAGGAAAAGT ACGGGGACGA CCGACAGAAG CTCAATGAAG AGATGATGCG TCTGTACAAG ACCTACAAGG TCAACCCGGC CGGAGGCTGT CTGCCGATGC TGCTGCAGAT TCCGGTCTTT ATCGCCTTGT ACCAGGCCTT GCTCGGAGCC ATCGAATTGC GGCATGCGGC CTTCATTACC CATGTGCCCT TTACGGATAT TATCTGGCTG GCAGACCTTT CGGCCAAGGA TCCCCTGTAT GTGACCCCGA TTGTTATGGG CGCGACCATG TTTTTGCAGC AGAAGATGAC GCCCACGCCA GGGGATTCGA CGCAGGCCAA GGTCATGATG TTCATGCCTC TTATCTTCAC CTTTATCTTC TTGAGTTTTC CCGCCGGGCT AGTCGTCTAC TGGCTGGTGA ACAACGTCCT GTCCATCGCC CAGCAGTGGA TGCTGACCCG GAAAGCCAGT TGA
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Protein sequence | MDDNTKRVIV AVVLSFIVIV GWNFLFPPQQ PPTQSNQAAN QTQQETPTVA EDSSSQVPGA SQTGDGVVAG RAQQSLSGST YSPEGSGKRV TVETPLYKAT INAAGGVLEH LVLKQYQEAI NPGAKNVDLI TRGTVQKAPM GLIWQQRPTW SEADWELQGN DLQLGQGESG SLTLVGTIDG VRLERTLHFS AETYLIDETL NVANARDHSL TGTVSFTMAS EQLAEESRYN RTELIYFNGG LNKESDTDEL QIGIHPAETV SWGGIASNYF LLAAVPTSGN MDLRGKYEDE IYRVALGSQV AVAPEQSAEL SCSYYVGPKE SEQLAQAPQN LLAAIQYGWF DFIAKPLIKV LKFFYSYVGN YGVAIILLTI LIKIVFWPLS QKSYKSMEKM KKLQPMMTQL KEKYGDDRQK LNEEMMRLYK TYKVNPAGGC LPMLLQIPVF IALYQALLGA IELRHAAFIT HVPFTDIIWL ADLSAKDPLY VTPIVMGATM FLQQKMTPTP GDSTQAKVMM FMPLIFTFIF LSFPAGLVVY WLVNNVLSIA QQWMLTRKAS
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