Gene Dret_2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2139 
Symbol 
ID8419989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2438552 
End bp2440204 
Gene Length1653 bp 
Protein Length550 aa 
Translation table11 
GC content55% 
IMG OID645038732 
Productmembrane protein insertase, YidC/Oxa1 family 
Protein accessionYP_003199001 
Protein GI258406259 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.122675 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGACA ATACCAAGCG CGTCATCGTG GCCGTAGTTT TGAGTTTCAT AGTCATCGTT 
GGCTGGAATT TTCTTTTCCC TCCCCAACAG CCCCCCACCC AATCGAATCA AGCAGCGAAC
CAAACCCAGC AAGAGACGCC CACTGTCGCT GAGGACTCCA GTTCCCAAGT CCCGGGAGCG
AGTCAGACGG GCGACGGTGT CGTGGCTGGC CGGGCGCAAC AAAGCCTGAG CGGGTCGACC
TATTCGCCGG AGGGATCCGG CAAACGGGTG ACGGTGGAAA CCCCCCTGTA TAAGGCGACG
ATCAATGCCG CCGGCGGTGT CCTCGAACAT CTGGTACTCA AACAGTACCA GGAGGCCATC
AACCCCGGTG CGAAAAATGT GGATCTCATC ACCAGGGGCA CAGTGCAAAA AGCGCCCATG
GGCTTGATCT GGCAGCAACG TCCGACCTGG AGCGAGGCCG ATTGGGAGTT GCAAGGAAAT
GATCTTCAGC TCGGCCAAGG GGAAAGCGGC TCTTTGACCC TGGTGGGAAC CATTGACGGT
GTTCGTCTCG AACGGACCCT GCATTTCTCG GCCGAGACCT ATCTGATCGA CGAGACGCTC
AATGTCGCCA ATGCCCGGGA CCATTCCCTC ACTGGAACGG TGTCCTTTAC CATGGCCAGT
GAGCAGCTTG CCGAAGAGAG CCGCTACAAC CGCACCGAGC TTATTTATTT CAATGGCGGA
CTGAACAAGG AAAGTGACAC CGACGAACTC CAGATCGGTA TCCATCCCGC CGAAACAGTC
TCCTGGGGCG GTATTGCCAG TAACTATTTT TTGCTCGCCG CCGTACCGAC GTCTGGCAAT
ATGGACCTGC GCGGGAAATA CGAAGACGAG ATCTATCGTG TGGCTTTGGG CAGCCAGGTT
GCCGTAGCGC CTGAGCAGAG CGCGGAGCTG TCCTGCAGTT ACTATGTCGG GCCTAAGGAA
AGCGAGCAGT TGGCCCAGGC CCCCCAGAAT CTTTTGGCCG CGATCCAGTA CGGCTGGTTC
GATTTTATCG CCAAGCCGCT TATCAAGGTC TTGAAATTCT TTTATTCCTA TGTCGGCAAC
TACGGTGTGG CCATCATTCT CCTGACGATC CTGATCAAGA TTGTTTTCTG GCCTTTGTCT
CAGAAAAGTT ATAAGTCCAT GGAGAAAATG AAGAAGCTGC AGCCGATGAT GACGCAGCTC
AAGGAAAAGT ACGGGGACGA CCGACAGAAG CTCAATGAAG AGATGATGCG TCTGTACAAG
ACCTACAAGG TCAACCCGGC CGGAGGCTGT CTGCCGATGC TGCTGCAGAT TCCGGTCTTT
ATCGCCTTGT ACCAGGCCTT GCTCGGAGCC ATCGAATTGC GGCATGCGGC CTTCATTACC
CATGTGCCCT TTACGGATAT TATCTGGCTG GCAGACCTTT CGGCCAAGGA TCCCCTGTAT
GTGACCCCGA TTGTTATGGG CGCGACCATG TTTTTGCAGC AGAAGATGAC GCCCACGCCA
GGGGATTCGA CGCAGGCCAA GGTCATGATG TTCATGCCTC TTATCTTCAC CTTTATCTTC
TTGAGTTTTC CCGCCGGGCT AGTCGTCTAC TGGCTGGTGA ACAACGTCCT GTCCATCGCC
CAGCAGTGGA TGCTGACCCG GAAAGCCAGT TGA
 
Protein sequence
MDDNTKRVIV AVVLSFIVIV GWNFLFPPQQ PPTQSNQAAN QTQQETPTVA EDSSSQVPGA 
SQTGDGVVAG RAQQSLSGST YSPEGSGKRV TVETPLYKAT INAAGGVLEH LVLKQYQEAI
NPGAKNVDLI TRGTVQKAPM GLIWQQRPTW SEADWELQGN DLQLGQGESG SLTLVGTIDG
VRLERTLHFS AETYLIDETL NVANARDHSL TGTVSFTMAS EQLAEESRYN RTELIYFNGG
LNKESDTDEL QIGIHPAETV SWGGIASNYF LLAAVPTSGN MDLRGKYEDE IYRVALGSQV
AVAPEQSAEL SCSYYVGPKE SEQLAQAPQN LLAAIQYGWF DFIAKPLIKV LKFFYSYVGN
YGVAIILLTI LIKIVFWPLS QKSYKSMEKM KKLQPMMTQL KEKYGDDRQK LNEEMMRLYK
TYKVNPAGGC LPMLLQIPVF IALYQALLGA IELRHAAFIT HVPFTDIIWL ADLSAKDPLY
VTPIVMGATM FLQQKMTPTP GDSTQAKVMM FMPLIFTFIF LSFPAGLVVY WLVNNVLSIA
QQWMLTRKAS