| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2117 |
|---|
| Symbol | |
|---|
| ID | 8419967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2407308 |
|---|
| End bp | 2408483 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038710 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003198979 |
|---|
| Protein GI | 258406237 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000191868 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.363164 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACGAAT TGCTGAAAAA TAGAAATCTC CAAATCCTGT TCGCCGTCAC TTTGATGGTT
GTCATGGGGG TTTCGAGTAT CATCCCCGTT CTGCCCACCC TGATCAAGGT CTTTGACCTC
ACACCGGAAA CCATCGGACT GGTGCTGACC ACATTTACCC TGCCCGGAGT CCTGTTTACC
CCTGTTTTCG GGGTCTTGGC CGATCGAGTC GGACGCAAAA AAATCCTCAT TCCGGCGCTG
TTGGTCTTCG GCATTGCCGG GGCCGCCTGC GCGCTGGTCA GAAACTGGGA ACTGCTGCTC
CTGTTGCGCT TTGTCCAGGG CACTGGCGCA GCTGCGTTTG GCATGATCAA TATCACGATC
ATCGGCGATC TGTTCAGCGG CACGCGTCGC ACTGCCGCGC TTGGCCTCAA TGCGAGCATC
CTCAGCGTGG GCACGGCAGT CTATCCGGCC GTGGGTGGCG CACTGGCTAT TTTGGGCTGG
TATTTCCCGT TCGCCCTGCC CCTGGCCGCA ATTCCCCTGG CCCTCATTGT CCTCTGGCAC
CTTGACAATC CCGAACCCGA CGGCGGGGAA TCCCTGGGTG ACTATTTCCG CAACGCCGCA
GGACAAATGC GCAGCAGACA GGCTCTGGGA CTTTTCCTCT GCACCCTGGG GACCTTCATC
CTGCTGTACG GGCCGTTTAT CACCTTTTTC CCGATCCTGC TGGACACCCG GTTCCAGGCC
ACCGCCCCGC AAATCGGTCT TCTTATTTCA GCCGCGTCAT TTATCACCGC CATCGCCGCC
TCCCAGTTGG GGCGATTGGC CGCCCATTTT TCCGAGCTCT GCCTGTTACG CTCGGCCTTC
GTCTTCTATG GACTTGCTTT TGCCATCATC CCCTTTTTCA CGAGCTTCGC CTGGCTTTTG
GTCCCGGCCT TGCTTTTTGG TGCGGCCCAG GCCCTGAGTA TCCCCAACGT CATGTCCCTG
CTCAATGATA TCGCCACACC GCGGACCCGA GCCGCCTTCA TGGCCGCCAA CGGCACCCTG
CTCCGGCTTG GCCAGACCCT GGCCCCGCTG TGCATGGGTG GCATCTTTGC CCTCGGCGGA
CTTCGAGCTG TGTTCTGGTC CGGGACCCTT CTCGCCGCTT GCTTGTTCCT CTTGACCCAT
CTCCTTTTAC GCCCGCAATG CGGCCCGCAA AGCTGA
|
|---|
| Protein sequence | MHELLKNRNL QILFAVTLMV VMGVSSIIPV LPTLIKVFDL TPETIGLVLT TFTLPGVLFT
PVFGVLADRV GRKKILIPAL LVFGIAGAAC ALVRNWELLL LLRFVQGTGA AAFGMINITI
IGDLFSGTRR TAALGLNASI LSVGTAVYPA VGGALAILGW YFPFALPLAA IPLALIVLWH
LDNPEPDGGE SLGDYFRNAA GQMRSRQALG LFLCTLGTFI LLYGPFITFF PILLDTRFQA
TAPQIGLLIS AASFITAIAA SQLGRLAAHF SELCLLRSAF VFYGLAFAII PFFTSFAWLL
VPALLFGAAQ ALSIPNVMSL LNDIATPRTR AAFMAANGTL LRLGQTLAPL CMGGIFALGG
LRAVFWSGTL LAACLFLLTH LLLRPQCGPQ S
|
|---|
| |