Gene Dret_2065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2065 
Symbol 
ID8419910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2352254 
End bp2352883 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content59% 
IMG OID645038653 
Product50S ribosomal protein L3 
Protein accessionYP_003198927 
Protein GI258406185 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.62685e-12 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.223373 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCTT TAAATCTCAT CGGGAAAAAA TTGGGCATGA CCCGTGTCTT TGGCGAAGAC 
GGCACAGTGA TTCCTGTGAC CGTCATCCAG GCCGGACCCT GCCCTGTCAT TCAGGTCAAG
ACGGCTGAGA CCGATGGATA TACCGCCTTG CAGATCGGAG CCGATCCGCT TCCCGCACAT
CGCGTGACCA AGCCCCAGCA GGGGCACCAG GCGAAGGCCG GGAAGGGATG TTTTCGGAAA
CTGCAGGAAG TACGTGTCGA GGACGCGGCC GAATACGAGC CGGGTCAGGA ATTGTCCGTT
GACATGTTCA CCATCGGAGA GCGGATCGAC GTGACCGGAA AATCCAAGGG CCGTGGTTTT
GCCGGGGCCA TGAAACGTTG GAATTTTGGC GGCTCCCCGT CGACCCACGG TCACGAGAAG
GTGCACCGGT CCACAGGTGC TGTGGGGCAA TGTGCCGCAC CATCGCGGAT CTTCAAGGGC
AAAAAGATGC CCGGACATAT GGGTGCGCAG CGGGTCTCCG TCCGCAATGC CGAAGTCGTT
GACATCCGCC CGGAAGACAA TCTGATCCTG TTGCGGGGTC AGGTGCCGGG TCCGAAAAAC
GGTGTCATAA CCCTCCGGAA GAAGAGCTAA
 
Protein sequence
MSALNLIGKK LGMTRVFGED GTVIPVTVIQ AGPCPVIQVK TAETDGYTAL QIGADPLPAH 
RVTKPQQGHQ AKAGKGCFRK LQEVRVEDAA EYEPGQELSV DMFTIGERID VTGKSKGRGF
AGAMKRWNFG GSPSTHGHEK VHRSTGAVGQ CAAPSRIFKG KKMPGHMGAQ RVSVRNAEVV
DIRPEDNLIL LRGQVPGPKN GVITLRKKS