Gene Dret_2062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2062 
SymbolrplB 
ID8419907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2350499 
End bp2351326 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content55% 
IMG OID645038650 
Product50S ribosomal protein L2 
Protein accessionYP_003198924 
Protein GI258406182 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0090] Ribosomal protein L2 
TIGRFAM ID[TIGR01171] ribosomal protein L2, bacterial/organellar 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.31539e-08 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.228916 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTATCC GGAAGCTTAA ACCGACTTCC CCCGGGCGTC GATTCCAGAC CGTTTCTATG 
TATGTGGATG TTACCCGGGA GACGCCTGAA AAGAGCCTGA CGAAGGGCTT GGGACGCAAA
AGCGGGCGTA ATAATGCCGG ACGGGTAACG TCCCGTCGTC AAGGTGGCGG AAACAAGAGA
CGATTTCGCG TTATTGATTT CAAGCGCAAC AAGGCCGAAA TACCGGCCAA AGTCGCCACC
ATTGAATATG ATCCCAACCG CAGTGCCCGG ATCGCGCTTC TGCACTATGT CGATGGGGAA
AAGCGCTATA TTCTGGCTCC CTTGGGCCTG AAAGTGGGCG ATTTTGTCTA CTCCGGTGAC
AATGTGGACA TCAAGCCCGG CAACGCCATG CAGCTGAAGT CCATACCGGT CGGGACCACC
GTGCACAATA TTGAATTGGT TCCAGGCAAA GGCGGGCAAA TGTGCCGCTC AGCCGGAACA
TACGCGCAGC TGGTCGCTAA AGAAGGCAAG TATGCTTTGC TCCGGCTTCC CTCCGGGGAG
ATCCGGCATG TCCTGGCTGC ATGCCAAGCT ACGGTCGGTC AGGTGGGCAA TGTGCACCAT
GAAAATATTC GAGTGGGTAA AGCTGGCCGG AATCGCTGGA AGAATCGTCG TCCTAAGGTG
CGTGGCGTGG CCATGAACCC GATCGACCAC CCCCTTGGTG GTGGTGAGGG CCGCAGTTCT
GGCGGTCGTC ATCCGGTGAC CCCTTGGGGA CGGCCAACGA AAGGGTATAA GACACGAAAT
CCCAAGAAAC CTTCTTCGCG TTTGATTGTT AAGAGAAGGA ATAAATAG
 
Protein sequence
MSIRKLKPTS PGRRFQTVSM YVDVTRETPE KSLTKGLGRK SGRNNAGRVT SRRQGGGNKR 
RFRVIDFKRN KAEIPAKVAT IEYDPNRSAR IALLHYVDGE KRYILAPLGL KVGDFVYSGD
NVDIKPGNAM QLKSIPVGTT VHNIELVPGK GGQMCRSAGT YAQLVAKEGK YALLRLPSGE
IRHVLAACQA TVGQVGNVHH ENIRVGKAGR NRWKNRRPKV RGVAMNPIDH PLGGGEGRSS
GGRHPVTPWG RPTKGYKTRN PKKPSSRLIV KRRNK