| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2059 |
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| Symbol | rpsC |
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| ID | 8419904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2349217 |
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| End bp | 2349858 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645038647 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_003198921 |
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| Protein GI | 258406179 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00063998 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0926898 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGGTCAAA AAGTCCATCC ATACGGTTTT CGGCTGGGGT ATAATAAAAA CTGGCTTTCT
CGCTGGTTCA GCAGAAAGGA TTACCCGCAG TACGTTTACG AAGACCGGCA AATTCGGAAT
TATGTGAAGT CGAAGTTGTA CCATGCTGGT TTGTCTTCGC TGGAGATCGA GCGCTCAGCT
TCCAAGCTGC GCCTGATCAT CCACACCGCC CGGCCTGGTA TTGTCATTGG GCGCAAAGGC
GTGGAAATCG AGAAATTGCG CAATGACCTC AAGAAGAAAT TCAAGCGTGA TTTTTCCATT
GAAGTCAATG AAATCCGCCG CCCGGAGACG AACGCGCAAT TGGTGGCTGA AAACGTTGCC
ATGCAGCTTG AACGCCGTGT CGCCTTTCGG CGGGCCATGA AGCGGACCAT CAGTTTGGCT
CGGAAATTCG GTGCCGAGGG AATCAAGATC TCGTGCTCCG GGCGTTTGGG CGGGGCCGAT
ATTGCTCGTA CAGAGTGGTT CCGTGAAGGA CGTGTTCCGC TGCAGACCTT GCGTGCTGAC
CTTGATTACG GCTACGCCGT GGCTCGGACC ACCTATGGGG TCATTGGAGT CAAGGTGTGG
ATCTTCAGGG GTGAAATACT CGATGATGAG GTGTCCAGCT AA
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| Protein sequence | MGQKVHPYGF RLGYNKNWLS RWFSRKDYPQ YVYEDRQIRN YVKSKLYHAG LSSLEIERSA
SKLRLIIHTA RPGIVIGRKG VEIEKLRNDL KKKFKRDFSI EVNEIRRPET NAQLVAENVA
MQLERRVAFR RAMKRTISLA RKFGAEGIKI SCSGRLGGAD IARTEWFREG RVPLQTLRAD
LDYGYAVART TYGVIGVKVW IFRGEILDDE VSS
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