Gene Dret_2026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2026 
Symbol 
ID8419871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2323292 
End bp2324773 
Gene Length1482 bp 
Protein Length493 aa 
Translation table11 
GC content56% 
IMG OID645038614 
Productsignal recognition particle protein 
Protein accessionYP_003198888 
Protein GI258406146 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0541] Signal recognition particle GTPase 
TIGRFAM ID[TIGR00959] signal recognition particle protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.41588e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00894206 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTTGATA CCCTTTCTGA CAGACTTGAC TCGATATTCA AGCGCATTAA AGGCCAAGGT 
CGCCTGGACG AGAAGGCGAT CCAGGAGGGG TTGCGTGAGG TGCGCCTGGC CCTTTTGGAA
GCGGACGTCA ATTTTAAGGT GGTCAAGACC TTCACCGATC GCGTCCGGGA ACGGGCCATG
GGCCAGGAGG TCCTGTCCAG CCTGACACCA GGCCAGCAGG TCATCAAGAT TGTCCACGAG
GAGATGATCG ATCTGCTGGG TGGCAGTCAG GAAGGATTGA ATCTCAAAGG CCCGGCGCCG
CGGGTTATTA TGCTCGTCGG CCTCCAGGGA TCGGGAAAAA CGACCAGTTC CGCGAAGCTG
GCCCTGCAAC TGCGCCGCGA TAACCATGCG CCGCTGTTGG TGCCCGCTGA CGTTTACCGG
CCAGCGGCTA TCGACCAACT CCATCGTCTG GCCTCTGAGA TCGACATTCC GGCTTACCCG
TCGACTTCTG AGATGAATCC GGTGGATATC TGTCGCGACG CCCTCGAAAA GGCGCGCGAA
AACGGCCAGG ATACCGTTTT GCTGGACACG GCCGGCCGGC TCCATGTCGA TGAAAAACTC
ATGGATGAGC TGGCGCGGAT CAAAGAGGTC TGCGCTCCCA GTGAAATCCT GCTTGTGGCC
GATGCCATGA CCGGACAGGA CGCCGTCAAT GTGGCCGAGC GCTTTGACGA ATTGCTCGAC
TTGACCGGCG TTGTGCTGAC CAAGATGGAG GGGGATGCCC GCGGCGGGGC GGCCTTGTCT
ATCAAGTCCA TCACCGGCAA GCCCATCAAA TATATGGGGG TTGGGGAAAA GCTTAAGGAT
ATTGAGGCTT TTTATCCTGA TCGTGTGGCA TCGCGCATCC TGGGTATGGG CGATATCCTG
ACCTTGATTG AAAAAGCCCA GACCGATGTC AGCGAGCAGG AAGCCCAGGA GCTCGAAGAC
AAATTTCAGC GGGCGGATTT CGATCTCGAT GATTTCCGCA AACAGATGCG GCGGCTGCGC
AAAATCGGCT CCCTGGACAG CTTATTGAAG ATGTTGCCCG GGGCCGGAAA AATGCGGGAG
CAACTCCAAA ACGTCCAGAT GCCGGAAAAA GAACTGGTCA AATTGGAAGC CATGATCAGT
TCTATGACCG TCACGGAACG GAGTCGTCCG CAGTCCATCG ACACCAGCCG CAAGGAACGC
ATCGCCCGAG GCAGTGGGAC CACTGTTTCG GATGTGACTC AGCTGCTCAA AAATTTCAAC
CAGATGCAAA AGATGTTGAA AAAAATGGGC GGCAAGGGCA AAAAGAATAC TGCGGCTATG
CCCTCGGATA TGTCAGCAAT GGCTGGCATG TCCGGGATGC CTGGAATGCC GGGGGGGTCG
GGTGGCACCG GCGGTGGCCA GGATCCGCGC AAGCGCCAGA AGGAAATTGA AAAGCGGCGG
AAAAAAGCCA AAGCCAAAAA GAAACAACGC AAAAAGAAAT AA
 
Protein sequence
MFDTLSDRLD SIFKRIKGQG RLDEKAIQEG LREVRLALLE ADVNFKVVKT FTDRVRERAM 
GQEVLSSLTP GQQVIKIVHE EMIDLLGGSQ EGLNLKGPAP RVIMLVGLQG SGKTTSSAKL
ALQLRRDNHA PLLVPADVYR PAAIDQLHRL ASEIDIPAYP STSEMNPVDI CRDALEKARE
NGQDTVLLDT AGRLHVDEKL MDELARIKEV CAPSEILLVA DAMTGQDAVN VAERFDELLD
LTGVVLTKME GDARGGAALS IKSITGKPIK YMGVGEKLKD IEAFYPDRVA SRILGMGDIL
TLIEKAQTDV SEQEAQELED KFQRADFDLD DFRKQMRRLR KIGSLDSLLK MLPGAGKMRE
QLQNVQMPEK ELVKLEAMIS SMTVTERSRP QSIDTSRKER IARGSGTTVS DVTQLLKNFN
QMQKMLKKMG GKGKKNTAAM PSDMSAMAGM SGMPGMPGGS GGTGGGQDPR KRQKEIEKRR
KKAKAKKKQR KKK