| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1975 |
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| Symbol | |
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| ID | 8419820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2263632 |
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| End bp | 2267030 |
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| Gene Length | 3399 bp |
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| Protein Length | 1132 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 645038563 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_003198837 |
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| Protein GI | 258406095 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.109081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.151355 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTCGA ATCTCGCCGA CGGTAAGCAG CGCAGCAGGG CGCTGGACCC ATACACATCG
TTTATCGTCC AGGCCCCTGC CGGGGCGGGG AAAACGGAGC TTTTGACCCA GCGCTACCTC
GTCTTGCTCG CTGGGGTAAG CGCACCGGAA GAGGTCCTGG CCATTACCTT CACCCGCAAG
GCGGCCACCG AGATGCGCAA TCGCATCATT GCCGCCTTGC AGCGGGCCGG TGATCCGACG
CCGCCGGACA AGCCCCATGA GGCGCTGACC TGGCGTCTGG CGCGGGCGGT TCGCGAACAG
GACCAGCTCC TTGGCTGGGA ACTGGAGCAG GCCCCGTCAC GATTGAAGAT CCAGACCATC
GATTCGCTGT GCGCGCAACT CACCCGGCAG ATGCCGGTTT TGTCTTCATT TGGCGCGGCC
CCCGGCATCC GCGACGACGC CAGGGAGTTT TACCGGGAGG CGGCCCGCAA CACCCTGGCC
GAGTTGGACA ACGAAACGTG GTCTGAACCG TTGGCGACTC TGCTCGCCCA TCTCGACGGC
AACACCGACC AATTCGAGGC GCTGCTGGTG GATATGCTCG GCCGGCGGGA CCAGTGGCTG
CGGCATGTGC TCCAACAAGA CGCCAGGGGA CAGGGCCGGC AGATACTTGA AGCGGGGTTG
GACAGGATCG TCAGCCGGGC GCTCGCCGAG TTGACCGTTT TTTTTGGCGA CGAGCGGGGC
GAGGAACTGC TCGAACTGCT GCGGTACGCC GCCGCCAATC TCGAACGCGA TGGGAAAACC
TTGCTGGCAA ATTGCCTGGG AGTTGAGGAA TTTCCCGACC CGGATCCAGC CGCTTTGCCC
TTTTGGCGTG ACGTCTGTGA TTTTCTGCTC ACGGATAGCA ACCAGTGGCG CAAATCGGTC
ACCAAAGGGC TCGGGTTTCC CGCCCCCAGC AGTGTTGGGA CAGCGCAGAA GGCGCAAGCC
AAGGACTCCA AGGAGCGGTG GCAGTCTCTG GTTGCGGATC TCGCCGATGA AGAGGGGCTT
TTGGAGACCC TGCAGATGGT CCGGGGACTG CCGGAAGGCA ACTACAGCGA TGCACAATGG
ACCGTGCTCC AGGCCCTGTT GGCGGTCCTC AAACTCGCCA CGGCCCAACT CCTGCTCGTT
TTCCAGGGCG CCGGGGAAGT CGATTTTATC GAGATCGGGA TGCAGGCCCG CCACGCCCTT
GGCGAGCCCC AGGCTCCCAC CGATCTGGCG TTGAGTCTGG ACTACCGTAT TCAGCATATC
CTCATGGACG AATTCCAGGA TACCTCCGTG ACCCAATTCG AGCTTTTGGA GCGGCTCGTT
GCCGGTTGGC AACCGGATGA CGGGCGGACG TTTTTTGGGG TCGGCGATCC CATGCAGTCC
ATTTACCGCT TCCGCGAGGC CGAAGTCGGG CTGTTTTTGC AGGCCGCCCG CAACGGCATC
GGCGATATCC CTTTGGAACC GCTGGTTCTC TCGGTCAACT TCCGTTCCCA GGCCGGGGTG
GTCAACTGGG TCAACGCGGT CTTCCCGGAC GTGATGCCGA CCCAGCCGGA GGCGATGACC
GGTGCGGTGC CGTACACCCC GTCGCAGACC ATACGGGCAG CGAACGCGGA GCACGCCGTG
TCCGTGCACC CCCGCCGCGC GGCAAATGAA GCGGCCGAGG CGGAGGAGGT GGCGGCCTCT
ATCCAGACAA CCCTGGAGAC GGTGCCCCAG CATGAGCGCA TAGCTGTGCT GGCCCGGGCG
GCAAATCATC TGGTCCCGAT TGTCCAACGC TTGCGCCGCG ACGGCATCCC GTTTCAGGCC
GTGGATATCG ATCCCGTGAT CGAAAAGCCG GTTGTCAGCG ATCTGCTCGC CTTGACCCGG
GCCCTGGCCC GCCCGGCAGA CCGTCTGGCC TGGCTCGCCG TGCTCAGGGC CCCGTGGTGC
GGTCTCAGCG CAGGGGATCT CTGCACGGTG GCGCAGGAGT GTTCGGGGCC CTTGTGGCCG
GCTCTCGAAG GGGCTGTTCA GGAGCAGACC GTTTCGGCCT CAGGGCAACA CCGTCTGCAA
CGGGTTGTGG GGAGTCTGCG TCCTGTTTTG GAACAGCGCG AATACATCGC CTTCTACAAG
GGGGTGGAGA TGGCCTGGCA CGCCCTTGGC GGGCCGGCGT GTTTGACAGA TGCGGACGAG
CAGGAAGCCG CGAGGGTGTT TTTTGAACTC CTCCGGCACC TCTCGACGGG CGGCAGAACC
CCCTCCCCGG AGGAGGTGGA GGAAGGCCTC GCCAATCTGC GGGCCCGCCC GGAACCCGAC
GGGGCGGCAC GGGTGCAATT GATGACCATC CACAAGGCCA AGGGGCTGGA ATTCGAGACG
GTGATCATCC CGGGACTTGG TCGCGGCACA CCTCCGGTGG ATCGGAGGCT GCTCATGTGG
CAGGAGGTGC CGCGCGACAC TGGCGGTGAG GACCTGCTGC TGGCACCGGT TCCGCCCACC
GGCGGGAAAC CCGAGGCGAC ATACAGGTAT ATCCAGCAAT TGGAGAAGAC CAAGACCCGT
CTTGAGGAAG GGCGGGTGTT GTACGTGGCC GTGACCCGGG CCAGGGAGCG GCTGCATCTT
TTCGGAGCTG CCAAACAGCG CGCCGACGGG ACGCTTGCCC CCGTGTCCGG ATCACTTCTG
GAACTGCTCT GGCCTCATGT GAAGGACCGC TTTGAAGCGT GCCAAGGGGC GGCGGAGGAC
CAGGAGGGCG TTCAGCCGGA AGCCCAACAA GGGTATTGGC TCAGACGATT GCCCGCAAAC
TGGGAGGTGC CGGCAGTTCC GGTACGCGTG GGGGGCAGTG CGCGGGGAGT GGAGGGCCAG
AGCCGGGTTG AACGCCCTGA GTTCGATTGG GCCGGCCGGA CCGTGCGGCG GATCGGAACC
GTGATCCATC GGTGGCTGAT GCGGGTGGCC CAGGAAACGG AGCAGCATTG GCACGAGCGT
TCTCTGGCCA GGTGTCGCGA GGCGTTCCGG CGCGATCTGG TCGGCGAAGG GGTCGTTGGT
CCTGAGTTGA GCGCGGCGGT GGATCGGGTG GAGCAGGCCC TGGCGCAGAT CCTGTCAGAC
CGGCGCGGGC AGTGGCTTCT TGCTTCCCAC AGTGAGGCCC GCTGCGAGTA TCCCTTGACC
GGTGCCCTGG ATGGAGAACT CCATTCAGTG GTCCTGGACC GCACCTTTGT CGATGGACAG
GGGCAGCGCT GGATCGTGGA TTACAAGGCG GGGAGGCACA GCGGCTCGGA CCTGGAGGCA
TTCTTGGATC GTGAGCAGGA GCGCTACCGC GAGCAACTCG AAACCTACGC CCGCCTCGTG
GCCTTGTGGG AAAAGCGGCC CATTCGTTTG GGGCTCTATT TTCCGCTTGT CCAGGGATGG
CGGGAGTGGG CCTGGAAAGG GGAAGGGCAA GACACCTAA
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| Protein sequence | MDSNLADGKQ RSRALDPYTS FIVQAPAGAG KTELLTQRYL VLLAGVSAPE EVLAITFTRK
AATEMRNRII AALQRAGDPT PPDKPHEALT WRLARAVREQ DQLLGWELEQ APSRLKIQTI
DSLCAQLTRQ MPVLSSFGAA PGIRDDAREF YREAARNTLA ELDNETWSEP LATLLAHLDG
NTDQFEALLV DMLGRRDQWL RHVLQQDARG QGRQILEAGL DRIVSRALAE LTVFFGDERG
EELLELLRYA AANLERDGKT LLANCLGVEE FPDPDPAALP FWRDVCDFLL TDSNQWRKSV
TKGLGFPAPS SVGTAQKAQA KDSKERWQSL VADLADEEGL LETLQMVRGL PEGNYSDAQW
TVLQALLAVL KLATAQLLLV FQGAGEVDFI EIGMQARHAL GEPQAPTDLA LSLDYRIQHI
LMDEFQDTSV TQFELLERLV AGWQPDDGRT FFGVGDPMQS IYRFREAEVG LFLQAARNGI
GDIPLEPLVL SVNFRSQAGV VNWVNAVFPD VMPTQPEAMT GAVPYTPSQT IRAANAEHAV
SVHPRRAANE AAEAEEVAAS IQTTLETVPQ HERIAVLARA ANHLVPIVQR LRRDGIPFQA
VDIDPVIEKP VVSDLLALTR ALARPADRLA WLAVLRAPWC GLSAGDLCTV AQECSGPLWP
ALEGAVQEQT VSASGQHRLQ RVVGSLRPVL EQREYIAFYK GVEMAWHALG GPACLTDADE
QEAARVFFEL LRHLSTGGRT PSPEEVEEGL ANLRARPEPD GAARVQLMTI HKAKGLEFET
VIIPGLGRGT PPVDRRLLMW QEVPRDTGGE DLLLAPVPPT GGKPEATYRY IQQLEKTKTR
LEEGRVLYVA VTRARERLHL FGAAKQRADG TLAPVSGSLL ELLWPHVKDR FEACQGAAED
QEGVQPEAQQ GYWLRRLPAN WEVPAVPVRV GGSARGVEGQ SRVERPEFDW AGRTVRRIGT
VIHRWLMRVA QETEQHWHER SLARCREAFR RDLVGEGVVG PELSAAVDRV EQALAQILSD
RRGQWLLASH SEARCEYPLT GALDGELHSV VLDRTFVDGQ GQRWIVDYKA GRHSGSDLEA
FLDREQERYR EQLETYARLV ALWEKRPIRL GLYFPLVQGW REWAWKGEGQ DT
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