Gene Dret_1906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1906 
Symbol 
ID8419749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2190543 
End bp2191277 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content54% 
IMG OID645038492 
Productouter membrane assembly lipoprotein YfiO 
Protein accessionYP_003198768 
Protein GI258406026 
COG category[R] General function prediction only 
COG ID[COG4105] DNA uptake lipoprotein 
TIGRFAM ID[TIGR03302] outer membrane assembly lipoprotein YfiO 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.17715e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.423153 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAATA AAAAGACGTT GCTGACCGCT TTGCTGCTCC TGTTTCTCTG GGGCAGCATG 
GGTTGTGGCA CGGTGGATTA CTTCTTCTTG AAGCCTCCGG AAGACACAGC CCAGGAATTG
GCTGAAGCCG GCCGGGCGGC TATGGCTGAG AAGGATTACG ACGCGGCGAT TGAGTATTTT
ACCAAACTCA AGGAACGCTA CCCGTTTAGT CCCTATACAC CCGACGCGGA ACTCGCCCTG
GGCGACGCCT ATTTTCTGGA CGAACAATAC AAGGCCGCAG TGGACACTTA TAAGGAGTTC
GAGTCCTTAC ATCCACGGCA CAAGGCCATT CCCCATGTTC TGTTCCAGAT AGGCTTGGCG
AATTTCAAGC AATTTGATTC CATCGACCGG CCGCAGACCA ATATGGAAGA GGCATTGCAG
TATTTTCGCC GTGTTCAGCA GGGATTTCCT GAAACCCCGT ATGCCGAGAA GGCGGGTGAC
TATATCACTC AATGCCGCCG TTACCAGGCC GAGCACGAAT TGTTCGTGGC GGATTTTTAT
TGGCGCCGAG AGGATTTTGG AGCAGCCTGG AAACGCTACG CCTATGTCGC TGAGGAATTT
GCCGAACTGC CGAAAATCCA GGACTACGCC CGGGATCGAC AGGAGATCGC CTATTTGCGC
TACCAGCAGC ATCGCTCGCA GACCAAGCGG GAAGAGGAGC AGGGCAGCTG GAAGCAGTGG
TTCGATTGGC TCTAA
 
Protein sequence
MGNKKTLLTA LLLLFLWGSM GCGTVDYFFL KPPEDTAQEL AEAGRAAMAE KDYDAAIEYF 
TKLKERYPFS PYTPDAELAL GDAYFLDEQY KAAVDTYKEF ESLHPRHKAI PHVLFQIGLA
NFKQFDSIDR PQTNMEEALQ YFRRVQQGFP ETPYAEKAGD YITQCRRYQA EHELFVADFY
WRREDFGAAW KRYAYVAEEF AELPKIQDYA RDRQEIAYLR YQQHRSQTKR EEEQGSWKQW
FDWL