Gene Dret_1858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1858 
Symbol 
ID8419699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2129829 
End bp2132429 
Gene Length2601 bp 
Protein Length866 aa 
Translation table11 
GC content60% 
IMG OID645038442 
ProductATP-dependent chaperone ClpB 
Protein accessionYP_003198720 
Protein GI258405978 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0542] ATPases with chaperone activity, ATP-binding subunit 
TIGRFAM ID[TIGR03346] ATP-dependent chaperone ClpB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.17935e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0630918 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTCA ATAAATTCAC CCAAAAATCA CAGGAAGCGA TCAGCGAGGC GCAGAATATC 
GGCGTGCGGC ACAGCCATCA ACAGATCGAC GCCGAACACG TTGCTTTGGC CTTGGCCGAA
CAAGAGGATG GCCTTATTCC GCGCCTGCTC GAGCGCCTCG GCAAAGATCC CAAGAATTAT
ATCGCGGCCC TGGAGGCCGA ATTGAAAAAG GTGCCGCAAG TCAGCGGCCC CGGCGCCCAG
CAAGGGCAGA TATATGTCAC CCAGCGGTTG AATCAGGTTC TGGTCAAATC CCAGGACATG
GCCAAGAAAA TGCAGGACGA CTACGTCTCT GTAGAGCATA TTTTCCTGGC CCTGCTGGAG
GAAAGCGCGT CCAGCGGTGT CGGGCGCGTC CACAAGCAGT TCGGACTGGA CAAAGACACA
GTCCTGCAGG CCCTGACCGA TGTCCGCGGC CACCAGCGCG TCACTTCGTC CAACCCGGAA
GGGACCTATG ACGCCCTGAA AAAATACGGG CGCGATCTGG TCGACGATGC GCGCAAAGGC
CGCCTGGACC CGGTCATCGG CCGGGACACC GAGATCCGGC GGGTCATCCG CATCCTCTCC
CGGCGCACCA AAAATAACCC GGTCCTGATC GGCGAGGCCG GGGTCGGCAA GACTGCCATC
GCTGAAGGGC TGGCCCAGCG CATCCTGAAC CAGGACGTTC CTGAAGGCCT CAAGCACAAG
ACCGTCTTTG CCCTGGACAT GGGCGCCCTG CTGGCCGGGG CGAAATACCG CGGCGAATTT
GAGGAGCGCC TCAAGGCCGT GCTCAAGGAG GTCCAGGAAT CCGAGGGGCA GATCATCATG
TTTATTGATG AGATGCACAC CATTGTCGGC GCGGGCAAAG CCGAAGGGGC CATGGATGCC
GGCAACCTCT TGAAACCCAT GCTGGCCCGC GGTGAACTGC ACTGCATCGG CGCGACCACC
CTGGACGAGT ACCGCAAGAA CATCGAGAAA GACCCCGCCC TGGAGCGCCG CTTCCAACCG
GTCATGGTTG AAGAGCCGGA CCTGGAGGAT ACCATCTCCA TCTTGCGCGG CCTGCGGGAA
CGCTTTGAGG TCCACCACGG AGTGCGCATC GCTGACGCGG CCCTGGTCAC TGCCGCGACG
CTGTCGCACC GCTATATCAC CGACCGCCAG CTGCCGGACA AGGCTATCGA CCTCGTTGAT
GAGGCCGCGG CCATGATCCG CACGGAAATC GACTCCCTGC CCACGGATCT TGACGAGATC
AACCGGCGGA TCATGCAGTT GGAGATCGAA CGCGAGGCCC TGAAGCGCGA AAAAGACGAG
GCTTCCAAGG AGCGGCTGGA ACGGCTGGAA AAGGAACTGG CTGACCAGAA GGAAAAGCAG
ACCACGCTGT TGGCCCAGTG GGAGAAAGAA AAAGAGGGCA TTAACGAACT TCGCTCCCTG
AAGGAAGAGT TGGAAAAGAC CCGGCGGGAC ATCGAGGAGG CCGAACGCAA TTACGACCTG
AACAAGGCCG CGGAACTGCG CTACGGCAAA CTCAACGAAC TCGAGCGGAA AATCGCGGAG
CGCGAACGAT CTCAGGACGA GGCCGGCGAA TCGCCGCAAT TGCTCAAGGA GGAGGTCGGC
GCCGACGATG TCGCCGAAAT CATTTCCCGC TGGACCCGCA TCCCGCTGTC ACGCCTCCTG
GAAGGCGAAA GGGAAAAACT CCTGCGTCTG GGCGACGTGC TGCACGAGCG GGTCGTTGGC
CAGGACGAGG CTGTCGAGGC GGTCGCTGAC GCCGTCCTGC GCGCCAGGGC CGGGCTCAAG
GATCCCCGCC GGCCCATCGG CTCCTTCATT TTTCTCGGCC CCACCGGCGT CGGGAAGACG
GAACTGTGCA AGACCCTGGC CGAATCGCTC TTTGACAGTG AAGAAAACAT GATCCGGCTG
GATATGTCCG AATACATGGA AAAACATACC ACAGCCCGCT TGATCGGGGC GCCTCCGGGA
TATGTCGGCT ATGAGGAAGG CGGACAATTG ACCGAGGCCG TGCGGCGCAA ACCGTATTCG
GTGATCCTTT TCGACGAGAT CGAAAAGGCC CACGCCGATG TCTTCAACAC CTTGCTCCAG
ATCCTGGATG ACGGCCGACT GACCGACAGT CACGGTCGGA CCGTGGATTT CAAAAACACG
ATCATTATCA TGACCTCCAA TCTCGGGTCC GAATTCATGC TCGAGGGCAT CAGCGGCGAG
GGGGAACTCA CGGACACGGC CCGCTCCCAG GTCATGAACA CCCTGCGCGG CTCATTCCGG
CCCGAATTTC TGAACCGGGT CGACGAGATT GTCATGTTCA CCCCGCTGAC CCGCGAGCAG
ATCAAAGAGA TCATCGGCCT GCAGATGCAG CAGCTCCACA CGCGTCTGGA AGACCGCAAG
ATCACTTTGG AACTCACGGA AAACGCCCGC GAACTCATCG CCCGTGAGGC CTACGACCCG
GTTTACGGCG CTCGGCCCTT GCGGCGGTTC CTGCAGACCC ACATCGAAAC CCCGCTGGCC
AAACAGCTCA TTGGCGGGCA CCTCAAAGAA GGGCAACATG TTGTTGTCGA TGGGGTTGAC
AGCGAGCTCG TGTTTCAATA A
 
Protein sequence
MDLNKFTQKS QEAISEAQNI GVRHSHQQID AEHVALALAE QEDGLIPRLL ERLGKDPKNY 
IAALEAELKK VPQVSGPGAQ QGQIYVTQRL NQVLVKSQDM AKKMQDDYVS VEHIFLALLE
ESASSGVGRV HKQFGLDKDT VLQALTDVRG HQRVTSSNPE GTYDALKKYG RDLVDDARKG
RLDPVIGRDT EIRRVIRILS RRTKNNPVLI GEAGVGKTAI AEGLAQRILN QDVPEGLKHK
TVFALDMGAL LAGAKYRGEF EERLKAVLKE VQESEGQIIM FIDEMHTIVG AGKAEGAMDA
GNLLKPMLAR GELHCIGATT LDEYRKNIEK DPALERRFQP VMVEEPDLED TISILRGLRE
RFEVHHGVRI ADAALVTAAT LSHRYITDRQ LPDKAIDLVD EAAAMIRTEI DSLPTDLDEI
NRRIMQLEIE REALKREKDE ASKERLERLE KELADQKEKQ TTLLAQWEKE KEGINELRSL
KEELEKTRRD IEEAERNYDL NKAAELRYGK LNELERKIAE RERSQDEAGE SPQLLKEEVG
ADDVAEIISR WTRIPLSRLL EGEREKLLRL GDVLHERVVG QDEAVEAVAD AVLRARAGLK
DPRRPIGSFI FLGPTGVGKT ELCKTLAESL FDSEENMIRL DMSEYMEKHT TARLIGAPPG
YVGYEEGGQL TEAVRRKPYS VILFDEIEKA HADVFNTLLQ ILDDGRLTDS HGRTVDFKNT
IIIMTSNLGS EFMLEGISGE GELTDTARSQ VMNTLRGSFR PEFLNRVDEI VMFTPLTREQ
IKEIIGLQMQ QLHTRLEDRK ITLELTENAR ELIAREAYDP VYGARPLRRF LQTHIETPLA
KQLIGGHLKE GQHVVVDGVD SELVFQ