| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1758 |
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| Symbol | |
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| ID | 8419599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2023374 |
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| End bp | 2025275 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645038342 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_003198620 |
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| Protein GI | 258405878 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.805776 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTAT CCTCATCATC TTCCATCCTC CAGGCGATCC AGTCTCCGCA GGATGTTCAG
GGGTTGTCCC TGACGGAACT GACGACCCTG GCTGAAGAAT TGCGGCAGGC CATTATTGAG
GTCGTGTCCA CCAACGGCGG ACATCTGGCC CCTTCACTCG GGGTCGTGGA ATTGACCCTG
GCGCTGTTAA AGAGCTTCAA CCCGGACCAG GACCGCTTTG TCTGGGACGT GGGGCACCAG
GCCTATGCCT ACAAGCTCCT GACCGGCCGC CGGGACCAAT TCCATACCTT GCGCTGTCTG
CACGGGGTCA GCGGATTCCC CAACCGCAGC GAAAGCCCTT ACGACCATTT TGGCGTCGGC
CATTCGAGCA CCTCGATTTC CGCAGCCCTG GGTATCGCTG TGGGGCGTGA TCTGGCGCAA
CAATCGAATA AGGTGCTGGC GGTCATCGGC GACGGATCCA TGACTGCGGG GCTGGCCTAC
GAGGGGCTCA ATCAGGCTGG CGGGCTGGAC CGTGATCTGG TCGTGGTTCT CAACGACAAC
GAGATGTCTA TTTCCAAGAA TGTCGGCGCC CTGTCCTCAT TTTTGAGTCG GCAGCTCTCT
TCGCGCTGGC TGGTGCGCTT CAAGCGTGAA CTCGAAGGGC GCTTGCGGCA GATTCCCCGG
ATCGGCGAGG ATCTGGTGAC CTACGCCAAG CGCAGTGAAG AGTCGTTCAA GGGGCTCTTC
ACGCCGGGAA TGCTTTTTGA AGCCTTTAAG TTCAATTATC TGGGGCCTAT TGACGGCCAC
GACCTGCGGC AGATGACTGA TGTCTTCAAG CAGGTACGTT CTTTGGACGG GCCGGTGCTC
GTTCATGTCC TGACCCAGAA GGGGCGGGGG TATACCCCGG CCGAGGACAA CCCGACCTAT
TTTCACGGCG TAGGGTGTTT CGAGCCGGAG ACCGGAAAAT CGAAAAAGAT TTCCAGCTGC
AGCCTGCCTC CATATACGAA AGTCTTTGGA CGGACACTGA GCCAATTGGC CCGTCAAAAC
GACCGGATCG TGGCTATTAC CGCTGCCATG CCCGAGGGCA CCGGCCTTGG AGAATTCGCC
GAAGAGTTCC CGGACCGATT TTTTGATGTC GGCATCTGCG AACAGCACGC CGTGACCTTT
GCCGCCGGGT TGGCTACTGA GGGCTATCGG CCGTTTGTGG CCATTTATTC GACGTTTTTG
CAACGTTCTT ATGATCAAAT CGTCCATGAT GTGTGTCTGC AAAACTTGCC CGTGACTCTT
TGCCTGGACC GAGGTGGTCT GGTCGGCGAA GACGGGGCGA CCCATCACGG GGCCTTTGAC
CTCTCCTTTT TGCGCCATAT CCCGAATCTG GCGGTCATGG CCCCTAAGGA TGAGCCCGAA
CTCCAGGACA TGCTGGCCAC GGCTCTGGCC CATAATGGAC CTGTGGCGGT ACGCTATCCT
CGGGGTGTGG GACCCGGCCA TGCCATAAAG GACAGCGCGA CCGCTCTGCC GTGGGCTCGG
GGTGAATGGC TCCGCTCCGG CAGCGATGCC GTGGTGCTGG CCATCGGTAG CCGTGTCGAA
CCCGCCCTGG AAGCCGTAGC GCAGCTTGCT GAGGCGACTG GGAAAGAGAT CGGGGTCCTC
AATCTCCGCT TCGTTAAGCC GTTGCCCGTC GAGGAAATCT TGGAAGCGGC CCGGCAGAGC
AGGCGCCTTC TGGTGGTCGA GGAAAATGCG GCCATCGGGG GAATGGGGTC GGCCGTGCTG
GAATGTCTGG CTGAAAACGA CGCCCTGGAC GGTATCCGGG TTCGTCGGCT CGGCCTGCCC
GACGCTTTTG TCGGGCACGG GCCGCAAAAA GCGCTGCGGG CCGAGGTTGG CCTTGATGCC
GCTGGTATCA GCAAGGCATT GCGGGACTTT TTGAGCGAAT AG
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| Protein sequence | MTVSSSSSIL QAIQSPQDVQ GLSLTELTTL AEELRQAIIE VVSTNGGHLA PSLGVVELTL
ALLKSFNPDQ DRFVWDVGHQ AYAYKLLTGR RDQFHTLRCL HGVSGFPNRS ESPYDHFGVG
HSSTSISAAL GIAVGRDLAQ QSNKVLAVIG DGSMTAGLAY EGLNQAGGLD RDLVVVLNDN
EMSISKNVGA LSSFLSRQLS SRWLVRFKRE LEGRLRQIPR IGEDLVTYAK RSEESFKGLF
TPGMLFEAFK FNYLGPIDGH DLRQMTDVFK QVRSLDGPVL VHVLTQKGRG YTPAEDNPTY
FHGVGCFEPE TGKSKKISSC SLPPYTKVFG RTLSQLARQN DRIVAITAAM PEGTGLGEFA
EEFPDRFFDV GICEQHAVTF AAGLATEGYR PFVAIYSTFL QRSYDQIVHD VCLQNLPVTL
CLDRGGLVGE DGATHHGAFD LSFLRHIPNL AVMAPKDEPE LQDMLATALA HNGPVAVRYP
RGVGPGHAIK DSATALPWAR GEWLRSGSDA VVLAIGSRVE PALEAVAQLA EATGKEIGVL
NLRFVKPLPV EEILEAARQS RRLLVVEENA AIGGMGSAVL ECLAENDALD GIRVRRLGLP
DAFVGHGPQK ALRAEVGLDA AGISKALRDF LSE
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