| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1694 |
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| Symbol | |
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| ID | 8419525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1950087 |
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| End bp | 1953977 |
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| Gene Length | 3891 bp |
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| Protein Length | 1296 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645038268 |
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| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
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| Protein accession | YP_003198556 |
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| Protein GI | 258405814 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0847615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00494316 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCATTGC CCTCGATCGT TTTTAAAGCA TCGCGGTGGA CAATAGTCTT TGCATTGTGG
GCTATGATTT TAGGTTTCGC CTCGGTTGCT TTTAGCGACA ATGGCGATCC AGAATTGCTG
TGTTCCAATT ACGAAGCCAA CCCTCCGTTC ATTGCCTCCG GGGTCATGCC CTCGACGCAT
ATTATTCTGG ATAATTCGGG TTCTATGCAT GAGTTTGCGT ACCAGGAAGA ATTGGCCTGG
TTTGATTACA GTTCAACCAC TAGCTTTGCG GCTCGGTCCG GATTCAACGC GACCCAAGCG
TATACGGGCT ATTTTGATCC GTACGAGTAT TACAGTTACA ATTCCACGGA AGGGTATTTT
TCCGTGGACA CCCAAAATGG CCCCTGGAGT GGGAACTTTT TGAATTGGGT GTCCATGCAC
CGGATCGATA TTGCCAGGCA TGTCATGACC GGGGGGAAAT ACAATTCCAC CACAAATACC
CTCGAGGTTC AGATTTCGGA TTCCTCCGAT AGGGGCCGTT TCAAGGTTTT CGACGATAGC
GAAACACGCC TCGATTTGAA TGGGCAAAAC CGGCATATGA CGCCCCACAC GGAAGAGATC
GTTTTCAGTT TGCCGGTTAG CGGCATCCAT ACCGATTGGT ATGTATACAG CGCTACCTCA
TCAGGAGATG ACTGGTCCAA TGATGGTCAT ATTGCCACGT ACGAGCATCT GCAGGTACAC
CAGGCACAGG CACCAAAAGG TGTGCTGGAT AATATTAACG ACCGCATGCG TTTGTCCTTA
TTTGTTTTTG ACCGTACCGG GGACACCAAG GACGGGGCGC ATATGCTAGA ACCCATAGGG
GCCAACGCCA CGGCAATAAA AGAAGCGATC AATGGGATAT ATCCGAGCAC ATGGACGCCA
CTTGCCGAAT CGTTACGCAC TGTGGTGGGG TATGTGCAAC AGTCTGACAC CGCCACCGCA
AGCACCGGAC CATACTATGA AGGCGACGAT AGTTACAGCC TGAGCCCTGA GGACGATCCG
TTTTATTTCC CCTCCGAGGC GCAGGACATC TATTGCTCCC AACAAAACGT CATCCTCATC
AGCGATGGCG AGTCGACCAT GGATGAGCAA ATCGCTGAGA ATTTGCATGA CTATGACAGC
GATAACAATG ATCCGGGCGA CTATCTCTCC AGCGGCACCG ATTACCTCGA CGACGTGGCC
CTGTGGGCGC ACACCACGGA CTTGCGCTCG GATCTGGCGG GCAATCAGAC CGTGGATTTG
TATACCATTT CCATATTCGG CGGCGGGGAA GACCTGTTGC GCGACGCAGC CGTGAACGGT
GGCTTTGTGG ACCTGGACGG CGGTGGCCAG CCCACGGCCT CGAGCAATGG GACCTCCGAA
TTCGATCGGG ACGGCGACGG CGAGCCGGAT CATTTTTTCC GCGCCGAAAC CGGGGAGGAG
TTGGAAGGGG CCTTGATCCA GGCCTTTTCC TCGATTTTGA ACCGATTGTC CTCCGGCTCC
GCTGCTTCCG TTATTTCAAC GTCCCGTAAG GGAGGAGGGG CTATCTTCCA GGCGGTGTTC
TGGCCGAACC TGATCGACGA GGAAGGCAAC CAGGTCTCCT GGGTGGGTGA TGTCCATTCG
CTCCTTGTGG ATGATTACGG CAATCTCTAC GAGGACGACG GGTCGGTTGA ATTCGGTCTT
GATGACGGGG ACTCGTCCGT TATTTTGTAC TACGATCCCA ATGCTGAAAA GACCAGGGCG
TGCTCCGACG GCAAAGTGCT TAACGGCATC TGCAACGGCA CGGCCAAAGA CATCAACGAA
GTGGAGTTCT TGTGGTCGGC CATGGATTGG CTCAATCGGG GCGGAACGCT CTTTGATGCT
GTGAATCAGC GAACGGAGTA TACTGTCGAC AGTACAACCG ACAATGAGCG GCGGTATATG
ATGACCTGGG TCGACGCAGA TACCGATGGT GTTGTCGATG ACGGAGAGTA CCAGCCTTTC
ACGACTGACC TTGATGTGGA TTATTGCAGC AATGCGACTA TCAATTGGGT TCGCGGACTG
GACCAGGACG GTTTGAAAAG CAGAGAGTTC TGGTTCGATA CCAACAACGA CGGGGTGGCG
GACGATCTTG GGACATGGCG TCTCGGCGAT GTGGTCCATT CCTCGCCCAC CGTGGTCGGT
CCGCCCATGG AAAATTATGA TTTTTACTGG GGGGATCGGT CCTATTCCGA GTTTTACGGA
AAGTACCGCG ACCGTCGTTA TATGGTCTAT TTTGGCGGCA ACGACGGCAT GCTTCATGCC
GTGAACAGCG GATTTTACTC CTCCAACGAC AAGACCTTTT ATAAATCCCA CAATCCCGGG
ACCGATTCCT ATTCCCAGTC CGGCGCTGCG GCTGATCTTG GTGCTGAGAT GTGGTCCTAC
GTACCGTACA ATTTGCTGCC CCATCTCGAA TGTCTGACGA AAGACGACAG CAATCATGAA
TATATGGTCG ACCTCCGGCC ACGGGTCTTC GACGTCAAGA TTTTCTTTGA TGAAAACGGC
GATCCCATTG ACGCCGATCA CCCCGGCGGA TGGGGAACGA TCCTTGTCAG TGGTATGCGC
TTTGGCGGGG CGGGCACACC GACCGAATTC GACCAGGACC GTTTTTTCGG GTCTTCGTAT
TGTATTTTTG ATATCACTAA CCCGGAAAAA GCCCCGACAT TTTTAGGTGA AATCACCTAC
GATGGAGACG ACAGCCTGGA AATGGGCTAC TCCATTACCA CCCCGACGGT GGTACCGGTG
AAAAGTGGTT CTGGTCTGCA GTGGTATCTC ATTCTGGGAA CCGGACCGGA TAGCCTGGAG
GGGACGAGTG AAGAAAGTGC CCGTGTTGTC GTGATTCCCC TGTTAGAAAT CGTGGATAAC
AACGGCGGAC CGGATTCCGA TTTTTCCTGG CAATTGCCCG GATGCTCCAG TTGTGATCCC
AGCCCCACAG AGGCTGGCTT TATCAAGGTT ACGTCCCAAG GGGGGGCCGT CGGGACCGAT
TTTGTCGCTC TGGACTATGA TTTCGACTTT TTTACCGATA TTTTGTATTT CGGGACTGTC
GAAGAGAAAA AAGGGGATTG GAGCGGCGGC CTTTGGCAAT TGAAAATTGA AGATGAGCCA
GACCCCGGTA AATGGGAAGA TAAAGAAAAA ATCCATGTGG ACAGTCCAAT AACAGGGGCT
CCAAATATTG GTTTTTATGG CGAGAACGTC TGGGTCTATT TCGGAACAGG AAAGTTCTGG
AATGTAGCTG ATAAAACAGA TACCGATACA AATGCGTTTT ACGGCATCAT AGAGCCAAAG
CAAACAACAG GTCCTGCTTA TAATTTTAGC ACTATTACAG ATTCAGGACT TGTGGATGTG
ACTGATATAC GTGTTGAAAA TGGGTCTTCA GATTTATTGT GCGTTGATGG TTCTACAAAC
TGCCTGCCAA ACAATGGGGC CACCGACACG TTTTACGAAC TCGTTGACCA TATTACAAAT
ACGAGCAATG TGGATGGATG GAAGCGCACA TTGACCGGTG ATGGGGAGCG AGTCATTGGT
CAGCCCACGC TTCTCGGTGG AGTTGTGACC TATTCGTCGT ATTTGCCGAA TGATGATGTC
TGCCAGGCGG AAGGAAGAAG TAATCTTTAT GCCCTGTATT ATTTGACAGG GACTTCTTGG
GTTGAAAATG TCTTTGGTGA TCAGGATCCC AATGAGCCAT ATATTGGGTT TATCAAGAGC
CTGGGCAAAG GCATGAGTAT CACGCCGAAT CTCCACCTGG GGAAAGAAAA GGGGACGAAG
GTTTTTGTCC AGTCGAGTAC CGGAGAGATT CTCGAAATCA ATCAACCGAA CCTTCCGATC
AAGGATTTTC GCTCCGGTTC CGGGGGCTGG CACACCCATG ATCTGGAATA G
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| Protein sequence | MSLPSIVFKA SRWTIVFALW AMILGFASVA FSDNGDPELL CSNYEANPPF IASGVMPSTH
IILDNSGSMH EFAYQEELAW FDYSSTTSFA ARSGFNATQA YTGYFDPYEY YSYNSTEGYF
SVDTQNGPWS GNFLNWVSMH RIDIARHVMT GGKYNSTTNT LEVQISDSSD RGRFKVFDDS
ETRLDLNGQN RHMTPHTEEI VFSLPVSGIH TDWYVYSATS SGDDWSNDGH IATYEHLQVH
QAQAPKGVLD NINDRMRLSL FVFDRTGDTK DGAHMLEPIG ANATAIKEAI NGIYPSTWTP
LAESLRTVVG YVQQSDTATA STGPYYEGDD SYSLSPEDDP FYFPSEAQDI YCSQQNVILI
SDGESTMDEQ IAENLHDYDS DNNDPGDYLS SGTDYLDDVA LWAHTTDLRS DLAGNQTVDL
YTISIFGGGE DLLRDAAVNG GFVDLDGGGQ PTASSNGTSE FDRDGDGEPD HFFRAETGEE
LEGALIQAFS SILNRLSSGS AASVISTSRK GGGAIFQAVF WPNLIDEEGN QVSWVGDVHS
LLVDDYGNLY EDDGSVEFGL DDGDSSVILY YDPNAEKTRA CSDGKVLNGI CNGTAKDINE
VEFLWSAMDW LNRGGTLFDA VNQRTEYTVD STTDNERRYM MTWVDADTDG VVDDGEYQPF
TTDLDVDYCS NATINWVRGL DQDGLKSREF WFDTNNDGVA DDLGTWRLGD VVHSSPTVVG
PPMENYDFYW GDRSYSEFYG KYRDRRYMVY FGGNDGMLHA VNSGFYSSND KTFYKSHNPG
TDSYSQSGAA ADLGAEMWSY VPYNLLPHLE CLTKDDSNHE YMVDLRPRVF DVKIFFDENG
DPIDADHPGG WGTILVSGMR FGGAGTPTEF DQDRFFGSSY CIFDITNPEK APTFLGEITY
DGDDSLEMGY SITTPTVVPV KSGSGLQWYL ILGTGPDSLE GTSEESARVV VIPLLEIVDN
NGGPDSDFSW QLPGCSSCDP SPTEAGFIKV TSQGGAVGTD FVALDYDFDF FTDILYFGTV
EEKKGDWSGG LWQLKIEDEP DPGKWEDKEK IHVDSPITGA PNIGFYGENV WVYFGTGKFW
NVADKTDTDT NAFYGIIEPK QTTGPAYNFS TITDSGLVDV TDIRVENGSS DLLCVDGSTN
CLPNNGATDT FYELVDHITN TSNVDGWKRT LTGDGERVIG QPTLLGGVVT YSSYLPNDDV
CQAEGRSNLY ALYYLTGTSW VENVFGDQDP NEPYIGFIKS LGKGMSITPN LHLGKEKGTK
VFVQSSTGEI LEINQPNLPI KDFRSGSGGW HTHDLE
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