| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1677 |
|---|
| Symbol | |
|---|
| ID | 8419508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1928613 |
|---|
| End bp | 1930247 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645038251 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_003198539 |
|---|
| Protein GI | 258405797 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGGAA GAGGGGAGAT GAAAGTTCGA TTTCTCGGGG CCGCCCGGAC CGTGACCGGC
TCGTGTTATC TTCTGGAAAC AGAACAGTAC CGTTTTGCGG TCGATTGCGG CCTGCACCAG
GGCAATCAGG AGATCGACGC CCGAAACTGG GATTTGAGCC TCTACACCCC GGCTGAGCTG
GATTTCATGC TCGTCACCCA CGCCCATATC GACCACACCG GGCTCTTGCC GCGCCTGGTC
AAATTGGGAT TTTCGGGCCC GGTCTATGCT ACGGAACCCA CCTGCGGCTT GATGGAGATC
ATGCTCCAGG ACAGCGCGCA CATCCAGGAG ATGGAGGCCC AATGGCGCAA CAGAAAACGA
CTGCGTCACG GCGGGAAGCA GCGTGAGCCT CTGTATGCCC GGCAGGACGC CGAAGCCGTT
TTTCCCCTTT TGCGGCCGCA AGCCTACAAT GAAATGTTCG AGCCGGTGCC CGGTCTGCGC
GTCAATTTCA AAGATGCCGG CCACATTCTC GGCTCCTCGT TTATCGAGAT CTGGGTGGAC
AGCGAGGCGC AGCGGACCAA GCTGGTCTTT TCCGGGGATC TGGGACGCCC CAATCAATTG
ATTGTCCGTG AGCCGAGCAT CGTCGAGACG GCCGACTATC TCTTTATGGA ATCGACCTAC
GGGGATCGCA ACCACAAGGA TGAAGACACC AGTCGGGAGG AATTGGCAGA GGCGATCGGG
TATAGCTACG GCCACGGGGA AAAGGTCATT ATTCCAGCCT TTGCTGTCGA GCGGACCCAG
GAGATCATCT ATACCTTGTA TCTGCTGCAC AAGGAGGGCA AACTCCCGCC GGACATGCCG
GTCTATGTGG ACAGCCCCCT GGCGACGAAA GCGACCGAGG TCTTTCGGCG CAATCCGGAA
TTTTTCGACC GCACCACCCG TGAATTGCTT GAGAATGGCG AAGATCCCTT CGGATTGCCC
CAATTGACTT TCACCCAATC CACCGAAGAG TCCAAGGCCC TGAACACTTT GAGCGGACCG
GCCGTGGTCA TTTCCGCCAG CGGGATGGCT AATGCCGGAC GGATCAAACA CCATCTGCGG
CATAATCTCT GGCGCCGTGG AGCCAGTGTC GTCTTTGTCG GCTTTCAGGC CAAAGGGACC
ACGGGACGGA AGATCGTCGA CGGGGCTGAA ACGGTCCGTA TTTTCGGGGA AGAGGTCGCT
GTTAGTGCCC GGGTGTATAC GATCAACGGT TTTTCCGCCC ATGCCGGACA ACAGCAGATT
CTGGACTGGC TCGGTCATTT CCGGACCAAC GGGATGCAGG TGTTTCTGGT GCACGGGGAA
TACCAGGCCC AGCAGACGTT GGCCGAATTG ATCGAGGGGC AATACGGACT TCGGGTCGCG
ATTCCCGATT ATCTGGAAGA AATCACCCTC CATCCTGGCG GGGAGAGTGA ATGCGACACC
TCCTTGCAGC AGCGCTTGCC CCAAGTCGAT TGGGATTGGC TGATCCAGCA GGCCCAGACC
CAACTCGACG AACTCCATTC CCGCCAAACG CAATTGGCCC GCCACCCGAT GGAAGAGCAA
TGGGAAATCC GGGACCGGCT CCAGGAGATC ACCAGCCAAT TGACCAAGTT GATTTCCGGC
CTGGCAAACA CATAA
|
|---|
| Protein sequence | MEGRGEMKVR FLGAARTVTG SCYLLETEQY RFAVDCGLHQ GNQEIDARNW DLSLYTPAEL
DFMLVTHAHI DHTGLLPRLV KLGFSGPVYA TEPTCGLMEI MLQDSAHIQE MEAQWRNRKR
LRHGGKQREP LYARQDAEAV FPLLRPQAYN EMFEPVPGLR VNFKDAGHIL GSSFIEIWVD
SEAQRTKLVF SGDLGRPNQL IVREPSIVET ADYLFMESTY GDRNHKDEDT SREELAEAIG
YSYGHGEKVI IPAFAVERTQ EIIYTLYLLH KEGKLPPDMP VYVDSPLATK ATEVFRRNPE
FFDRTTRELL ENGEDPFGLP QLTFTQSTEE SKALNTLSGP AVVISASGMA NAGRIKHHLR
HNLWRRGASV VFVGFQAKGT TGRKIVDGAE TVRIFGEEVA VSARVYTING FSAHAGQQQI
LDWLGHFRTN GMQVFLVHGE YQAQQTLAEL IEGQYGLRVA IPDYLEEITL HPGGESECDT
SLQQRLPQVD WDWLIQQAQT QLDELHSRQT QLARHPMEEQ WEIRDRLQEI TSQLTKLISG
LANT
|
|---|
| |