| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1601 |
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| Symbol | |
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| ID | 8419431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1848689 |
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| End bp | 1850113 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645038174 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_003198463 |
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| Protein GI | 258405721 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.62613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCTTAG AACTTCGGCA ACAATTGAAA CTTTCCCAGC AGCTGGTCAT GACCCCCCAG
CTGCAACAGG CCATCAAACT CCTGCAATTG TCACGCGTGG AGCTGCAAGA ACGTGTGGAG
CAGGAGCTGA TGGAGAATCC CATCCTCGAA CTCCAAGAAG ACGAGTCCGC GCCAGACAAT
GCCCCTGAGA CCGAGTCCAA AGGGGAGGAA CACACCCCGA TGGACATGGG GGAAAAGGAT
CTGGCGCGTA ACGCCGACTG GGAAGACTAT CTCGGAGTGT TCTCCACCTC TTCCGGGGCC
AGTCGCGACG CGGAGATTCC TGAAGAACTG CCTTCCTACG AAACCCGCTT TTCCGCTGAC
CATACCCTGG AGAGCCACCT CCTGTGGCAA CTCCATCTCA CAGAACTCAG CCAGGAACAC
AAAGAGATCG GCGAGGCCGT GATCGGCAAT CTCGGTCCCA CGGGCTATCT GTTGGCCAGT
ACCGATGAAT TGGCCGCCAG CACTGGGGCA ACGCCTGAAG CGATTGACGA AGTCGTCGGA
TTTGTCCAGC GTTTTGATCC CGTAGGGGTG GCCGCCCGCT CCGCCAGCGA GTGCCTGCTG
GTCCAACTCG AGACCGCTGG GGAAGAAGAC CCCATTTTGC TCTCCCTGGT GCGCGACCAT
CTCGAAGATA TCGAACGCCA CCGCTTCAAG CCCCTGTTGC GCAAGTTCCG GATCACCCAG
GAGGACCTGG AAACCTATAT CCAGCTCATC CGGGAATTGG ACCCCATGCC CGGCAGCAGT
TTCGGCGGTG CCACGAGCCC GTATATCAGC CCAGACGTCT ACGTCTATAA GGATGAAGAC
GAGTTCGTCA TCCAGCTCAA TGAAGAAGGG CTTCCCAACC TGCAGATCAG TCAGTACTAT
ATGGAGGCCT TCAAAGGACG CGGCGGGCAG GAAAAGGAGT ACTTCCAGGA TAAGATGCGC
TCGGCGGTCT GGTTGATGAA AAGTCTCTAT CAGCGGCAGC TCACCCTGTA CCGGGTCATG
GAGAGCATCC TCAAGTTTCA GCGGGAATTT TTCGAAGACG GGGTTTCCAA GCTCAAGCCG
CTCATTCTCA AGGATGTGGC CGAAGATATC GAGATGCACG AATCCACGGT CAGCCGGGTG
ACGACAAACA AATACGCGGC CACGCCGTTT GGTCTTTTTG AACTCAAGTT TTTCTTCAAC
AGCGGCCTCG GCCTTGACGG CGGTGGCCAA GTCGGTTCGG AGAGCGTCAA GGCGGCGATC
AAAAAGATGG TCAGCGAGGA AAATCCCCGT AAGCCCTTGA GCGATGAGAA GATCGTCTCC
GAATTGAAAA AAGAGCTCCA GATCAATATC GCGCGGCGAA CGGTGGCCAA GTACCGGACA
GCGCTGGGAA TCGCCTCTTC CTCTAAGCGA AAACGAATGG TATAA
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| Protein sequence | MGLELRQQLK LSQQLVMTPQ LQQAIKLLQL SRVELQERVE QELMENPILE LQEDESAPDN
APETESKGEE HTPMDMGEKD LARNADWEDY LGVFSTSSGA SRDAEIPEEL PSYETRFSAD
HTLESHLLWQ LHLTELSQEH KEIGEAVIGN LGPTGYLLAS TDELAASTGA TPEAIDEVVG
FVQRFDPVGV AARSASECLL VQLETAGEED PILLSLVRDH LEDIERHRFK PLLRKFRITQ
EDLETYIQLI RELDPMPGSS FGGATSPYIS PDVYVYKDED EFVIQLNEEG LPNLQISQYY
MEAFKGRGGQ EKEYFQDKMR SAVWLMKSLY QRQLTLYRVM ESILKFQREF FEDGVSKLKP
LILKDVAEDI EMHESTVSRV TTNKYAATPF GLFELKFFFN SGLGLDGGGQ VGSESVKAAI
KKMVSEENPR KPLSDEKIVS ELKKELQINI ARRTVAKYRT ALGIASSSKR KRMV
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