| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1553 |
|---|
| Symbol | |
|---|
| ID | 8419383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1796011 |
|---|
| End bp | 1796559 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645038126 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_003198415 |
|---|
| Protein GI | 258405673 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1443] Isopentenyldiphosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACATC CTCGTCAAGC CCAAAAAAAA CGATCCCGCC CGGACCCTGT CGAATTCGTC
GAGATCGTGG ATCGCAGCGA ACGTCCGCTG CTGGTCATGC CCCGGCACAC GGCCCAGGCG
CAACACCTGT TCATGCGCTC GGTCCTTGTC GTGGTCTACA GTCCGGAGCA CAAGCTCTAT
CTCCAGCACC GCAGCGAACG CAAGTCCGCG TTTCCCGGGT GCTGGGACCT CTCGGCCACA
GGCCATATTC TGCCCGGCGA ATCCCGGTTC GATGCGGCGA CACGGGAAGT CGAGGAAGAG
ATCGGGCTGC AAGTCAGCCA GCTCAAGGAA GTCCTCCGCC TGCCGGCCTC CCCGCAGACG
AACTTTGAAT TCGTGACCCT CTACTCCGCT GGCCGGACCC AGCAAACCCC GCAGCCCAAC
CCGGCTGAAC TCCAAGGCGG CGGGTTCTTC GATCCCGACG AAGTTGACTG CCTCTGCAAT
CAATTCACCG AGTACGTCAC GCCGGCCCTG TATTATTTCT GGCGGTTAGG GGTGCTGTTT
TCGAAGTAA
|
|---|
| Protein sequence | MAHPRQAQKK RSRPDPVEFV EIVDRSERPL LVMPRHTAQA QHLFMRSVLV VVYSPEHKLY
LQHRSERKSA FPGCWDLSAT GHILPGESRF DAATREVEEE IGLQVSQLKE VLRLPASPQT
NFEFVTLYSA GRTQQTPQPN PAELQGGGFF DPDEVDCLCN QFTEYVTPAL YYFWRLGVLF
SK
|
|---|
| |