| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1503 |
|---|
| Symbol | |
|---|
| ID | 8419332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1742813 |
|---|
| End bp | 1744162 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645038077 |
|---|
| Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_003198367 |
|---|
| Protein GI | 258405625 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00223779 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATG CAGCGCATCC GGAAACGTCG TACCAGTGGA TATTGAATAG CCTGGCTACA
GGGGTTTTCA CCGTGGACGA CAGGTTCCGG ATCACGTTTT TCAATACCCA GGCGGAGACT
TTGACCGGCT ATTCCCGGGA CGAGGCAGTG GGCAAGCTGT GTTGGCAGGT TTTTCAGACC
AGTCATTGTC AAAACGGGTG CAGCCTGAAA AGGGCAATGC AGGAGGAAAC CCGGATTTAC
AGCACTCGGC TGCAGATGAA GAGCAGGGAC AATATCCAGA TCCCGGTCGC GGTGACCGCT
GCCGTGCTCC AGGATGATGT GGGCCGGGTC ATCGGAGGAG TGGAGTCGTT TCAGGACGAC
CGGGAGCGGG TGGCCTTGGA AAAGGAGGTC ACTGGGGCGT TTGGGCTGCA GGATTTCATC
ACCGCCCATC CCCCCCTGCG CAAGCAGTTG CAGCGTCTGC CGGTCCTCGC CGACGCGGAC
AAGCCCCTTC TCATTCAGGG GGAGACCGGT GTGGGCAAGG ATTTTCTGGC CCGGATCGTT
CATAATATCA GCGTGCGGCG CCAGGAGCCG TTTCTGAAAG TCAATTGCGC GGCCATCCCG
GAAACAATGC TTGAGTCGGA ACTCTTTGGC TGCAAGCGGG GCGCCTTCAC CGATGCCAGG
GAGGACCGGC CGGGGAAGTT CCGTCTGGCC CAACAAGGGA CGATTCTCCT GGACGAATTG
GGGGAATTGA GCCCGGCCAT GCAGGCGAAG CTGCTCCAGG TCATTGAAGA GAAAGAGTAT
TTTCCGCTTG GGGCGACCCG AATGGAGACT GTCCGGGCCC GGGTCGTGGC GACGACGAAT
TGCGATCTCC AGGAAATGGT CGCTGGCGGA CGTTTTCGCA AGGATCTGTA TTATCGGTTG
AAAATGTGTG AAGTGATCAT CCCGCCGCTA CGGCAGCGAA GCGAGGACCT TCCGCTACTG
ATCGAATGTT TTCTGGAACG CGCGGCCCGG CTCAATCGGC GGCGGTGCCC CCGGCTGACC
GGCAAGGTGC AGCGGGTGCT GCTGTCGTAC AGGTATCCGG GCAATGTGCG GGAGATCAAA
AATATCATTG AATATGGTGT GCTGCTCTGC GGCGAGGCGA TCACTCTTGA GGATCTGCCG
GAATATATCC GGGAGGGGGG CAGTGAGAGC GCTGAGACCG GTGGCGATGT CGCGAATGGA
GCCGGCCAGC TCGCTTGCGC GGAGAAGACC ATTTTGTGGA ACGCGTTGCA GGAACACCGC
TGGCAGATCC AGGCCACGGC TCGGAGTCTG CGCATGAGCC GGGCGACGCT GTGGCGGAAA
ATGAAGAAGT ACGGGTTGTC CAAGAAATAG
|
|---|
| Protein sequence | MADAAHPETS YQWILNSLAT GVFTVDDRFR ITFFNTQAET LTGYSRDEAV GKLCWQVFQT
SHCQNGCSLK RAMQEETRIY STRLQMKSRD NIQIPVAVTA AVLQDDVGRV IGGVESFQDD
RERVALEKEV TGAFGLQDFI TAHPPLRKQL QRLPVLADAD KPLLIQGETG VGKDFLARIV
HNISVRRQEP FLKVNCAAIP ETMLESELFG CKRGAFTDAR EDRPGKFRLA QQGTILLDEL
GELSPAMQAK LLQVIEEKEY FPLGATRMET VRARVVATTN CDLQEMVAGG RFRKDLYYRL
KMCEVIIPPL RQRSEDLPLL IECFLERAAR LNRRRCPRLT GKVQRVLLSY RYPGNVREIK
NIIEYGVLLC GEAITLEDLP EYIREGGSES AETGGDVANG AGQLACAEKT ILWNALQEHR
WQIQATARSL RMSRATLWRK MKKYGLSKK
|
|---|
| |