Gene Dret_1490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1490 
Symbol 
ID8419319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1722136 
End bp1723743 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content59% 
IMG OID645038064 
Productpeptide chain release factor 3 
Protein accessionYP_003198354 
Protein GI258405612 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG4108] Peptide chain release factor RF-3 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.51643e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.20572e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGATT CCCATTTTGC ACGACAACTG CAGCGCGAAG TCCGGCAGCG GCGGACCTTC 
GGCATTATCA GCCACCCGGA CGCCGGGAAG ACCACGTTGA CCGAAAAGTT CCTCCTCTTT
GGCGGAGCCA TTCAGCAGGC TGGCGCGGTC AAGGCCAAGA AGGCCACCCG TCACGCCCGG
TCGGACTGGA TGAAGGTCGA GCAGGACCGC GGTATTTCCG TGACCTCATC GGTCATGAAG
TTCGAATACG GTGATTGCGA ACTCAATCTC CTCGACACCC CCGGCCACCA AGACTTTTCC
GAGGACACCT ACAGGGTGCT GACCGCTGTG GACTCAGCCT TGATGGTCAT TGACAGCGTC
AAGGGCGTCG AGAGCCAGAC CGAAAAGCTG ATGCAGGTCT GCCGCATGCG GTCCATTCCG
ATCATGACGT TTATCAACAA GCTCGACCGC GACGGCCGCG AACCGCTGGA ACTTCTCGAC
GAAATCGAAG ACAAACTCGG CATCCAGGCC GTGCCCATGA CGTGGCCCAT TGGCATGGGC
AAGCGTTTTC AGGGGGTCTA CGATCTCATC AACGGCGAGT TGCGGTTTTT TGAGACCGCG
GAGAACAAAG GCGCCCGCCC GAGGGAGGCC ACGGTGGTCA AGGATCTCGA GAGCGAGGAG
CTTGACAGAC TCCTTGGAGA GACCGCCGCC AATGAACTCC GGGAAGATGT CGAACTTCTG
AGCGGCGCCG GGTATCCCTT TGACCACGAG GCCTACTTGG CCGGAAAACA GACCCCGGTC
TTTTTCGGCA GCGCGGTCAA CAACTTCGGG GTCCAGGAAC TGCTGGACAA TTTTGTTCGC
TTGGCGCCGG CGCCCAAAGC GCGGGAGGCC GAGACCCGAA TGGTTGCCCC TGAAGAGCCG
GAATTCTCTG GTGTGGTCTT TAAGATCCAG GCCAATATGG ATCCCGACCA TCGAGACCGG
ATCGCGTTCA TGCGTATCTG CTCCGGGAAA TTCGAACGCG GTATGCGGGT GCGGCACCAC
CGGCTGAAAA AGAATATGCA GCTCGGCAAC GCGATCATCT TCATGGCTCG GGACCGGGCC
GGAGCCGAGG AGGCGTGGCC CGGGGACATT GTCGGACTTC CCAACCACGG CACGCTCAAG
ATCGGCGACA CCCTGACGAG CAAGGAAGAG CTGAAATTTC TGGGTATCCC GAATTTTGCC
CCGGAGTTTT TCCAGCGGGT TATCCTCAAG AACCCCCTGA AGTCCAAGCA GTTGGAAAAA
GGGCTGGCCC AGCTGGCTGA AGAGGGGGCG ATCCAGTTTT TCCGGCCCAT CACCGGGCGG
GAGTTTATTC TTGGGGCCAT TGGCGCCCTG CAGTTCGATA TCACCGCCGG GCGGCTGAAA
ACCGAGTACG GGGTCGAGGC GACCTACGAG CCGGTCCAGA TCTACGCCGT GCGCTGGGTG
GAATCGGAAA ACAAGAAGCA ACTCCAGGAA GTGCGCAAGA AGTACCACAA TTCTCTGGTG
GAAGACGCCC AGGGCGCACC GGCGCTGTTT TTTCCCACCC GTTGGCGGCT GGAAAAAGCT
GAGGAAGATT GGCCTGAGGT GCGCTTTACC CATGTGAAGG AGCATTGA
 
Protein sequence
MSDSHFARQL QREVRQRRTF GIISHPDAGK TTLTEKFLLF GGAIQQAGAV KAKKATRHAR 
SDWMKVEQDR GISVTSSVMK FEYGDCELNL LDTPGHQDFS EDTYRVLTAV DSALMVIDSV
KGVESQTEKL MQVCRMRSIP IMTFINKLDR DGREPLELLD EIEDKLGIQA VPMTWPIGMG
KRFQGVYDLI NGELRFFETA ENKGARPREA TVVKDLESEE LDRLLGETAA NELREDVELL
SGAGYPFDHE AYLAGKQTPV FFGSAVNNFG VQELLDNFVR LAPAPKAREA ETRMVAPEEP
EFSGVVFKIQ ANMDPDHRDR IAFMRICSGK FERGMRVRHH RLKKNMQLGN AIIFMARDRA
GAEEAWPGDI VGLPNHGTLK IGDTLTSKEE LKFLGIPNFA PEFFQRVILK NPLKSKQLEK
GLAQLAEEGA IQFFRPITGR EFILGAIGAL QFDITAGRLK TEYGVEATYE PVQIYAVRWV
ESENKKQLQE VRKKYHNSLV EDAQGAPALF FPTRWRLEKA EEDWPEVRFT HVKEH