Gene Dret_1484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1484 
Symbol 
ID8419313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1713878 
End bp1715050 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content64% 
IMG OID645038058 
Productalanine racemase 
Protein accessionYP_003198348 
Protein GI258405606 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0787] Alanine racemase 
TIGRFAM ID[TIGR00492] alanine racemase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.770988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.45672e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGTGCC GCCCAATATG GGCCGAGATC GATCTCGAGG CTATAGCTCA CAATATCAGC 
GAAATTCGCA ACGCCGTCGG TTTTGGGCCC CAGATCATGG CTGTGGTCAA GGCCAATGCC
TACGGCCACG GCGCCGTTGA AGTGGCTCAG GCCAGCTTGC GAGCCGGGGC GTCCTGGCTT
GGAGTGGCCA GGGTCGCCGA AGGCATCGAA CTCCGCGAAG CCGGCATTGC GGCGCCGATC
CTCGTTCTGG GTACCTCGCC CCCGGAATGC GCTTCGGAAC TGCTGGCCTG GGATCTGCGC
CAGACGGTTT CCGGCCTGGA CGACGCCCGG GCGCTTGCCC GCCATGCTCG GAACCAGGAC
AAGACGTTGC AGGTGCATCT CAAAGTCGAC ACTGGCATGG GACGGCTCGG ACTTCTGGCC
GGGCCGGAAC TCGGCGGCGA CTTTGATGCG GCCGGGGAAG AAGTCGTGGC GATCCAGCAG
CTCTCCGGGA TCGCGCTCGA GGGCATTTTC ACCCACTTCG CCTGCGCCGA CAGCCGGGAC
AAATCCAGCG CCTCCCGGCA ATGGCAGCGC TTCACCGACT TCCTCGAGAC CCTCGATACC
CGCTCCCTGC CCAGAATTCC CGTCCGCCAC GCTGCCAATA GCGCCTCCAT CATCGATCTG
CCGCGCACCC ATCTCGACCT GGTCCGAGCC GGGATCATGC TCTACGGCCT GTATCCGTCA
GCTGAAGTCG ACCATGCCGG TGTCCGTCTC AAGCCGGCCA TGACGGTCAA GGCCCGCATC
AGCCAGGTCA AAGATGTGCC CGCGGGGTTC TGCGTCAGCT ACGGTTCTAC CTATACGACC
CCTGCGCCAA CGCGGATTGC CACGGTGCCG GTGGGCTATG CCGACGGCTA CACCCGTTTG
CTCTCCTCGC AGGCGCACAT GGTGGTCCAC GGACAGCGGG TGCCGGTGGT GGGCCGAGTC
TGTATGGACC AGACCCTGCT TGATGTCGGC GGCCTCCCGG AAGTCGCTGC AGGAGACGAG
GTCGTCCTTC TCGGCAGCCA GGGTGAGGCG TGCGTCAGCG CGGACGAACT CGCCGAACTG
ACGGGGACGA TCAACTACGA AATCGTTTCC ACGCTCATGG CCCGTGTCCC GAGAATTTTT
CTGCCTGCCG TAGCGGGGCG TCACAGAGAC TGA
 
Protein sequence
MSCRPIWAEI DLEAIAHNIS EIRNAVGFGP QIMAVVKANA YGHGAVEVAQ ASLRAGASWL 
GVARVAEGIE LREAGIAAPI LVLGTSPPEC ASELLAWDLR QTVSGLDDAR ALARHARNQD
KTLQVHLKVD TGMGRLGLLA GPELGGDFDA AGEEVVAIQQ LSGIALEGIF THFACADSRD
KSSASRQWQR FTDFLETLDT RSLPRIPVRH AANSASIIDL PRTHLDLVRA GIMLYGLYPS
AEVDHAGVRL KPAMTVKARI SQVKDVPAGF CVSYGSTYTT PAPTRIATVP VGYADGYTRL
LSSQAHMVVH GQRVPVVGRV CMDQTLLDVG GLPEVAAGDE VVLLGSQGEA CVSADELAEL
TGTINYEIVS TLMARVPRIF LPAVAGRHRD