| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1453 |
|---|
| Symbol | |
|---|
| ID | 8419282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1682801 |
|---|
| End bp | 1683901 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645038028 |
|---|
| Product | Methyltransferase type 11 |
|---|
| Protein accession | YP_003198318 |
|---|
| Protein GI | 258405576 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000488747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.299769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACGC CATCCGAGGC CAAACGCCGC GAATTCGCCC ATACCATGTC GGAAATCCTG
AACCACGGGG CCCTCAATCT GGCCATGGGG GTCGGATACC GTCTCGGGCT CTTCGACGTC
CTGTGCCGCT TGGCGGCCCC GGCCAGTGTT TCCCAAATAG CTGAAGCCGC CGCTCTGGAC
CCGCGCTATA TCCGTGAATG GCTCGGTGTA ATGACCTGCG GCCGGATCGT GGAACTCAGC
CACGACACGA ATGGCGAGGA CCTGTTTTTC CTGCCCCCGG AACACGCCGC TTTCCTGACC
CGGGATTCCT CATCCAACAT GGGGGTCTAC ACACAGGAAC TCCCCCTGCT GGCCCAGTCC
GCCTATGATG CCGTTGCCGC GGCCTTCGCC ACCGGCGAAG GGGTCGGATA CGAGCGATAC
CCCGATTTCC AGGCCTTCAT GGCCCAACTC GCCGACGCCA AACACGAACA GACTCTGCTC
ACCACCTTCC TCCCCTCGGT CGCCCAGGGC GCTATCCAGG ACAGACTGCA CTATGGCATC
CGGGTCTGTG ATGTGGGCTG CGGCCGGGGA ACCGCGGTTC TCCTCATGGC CGAAGCCTTT
CCCCGTAGCA CATTTGTCGG TCTGGACATC GATAGCGCAA CCGTAGACCT GGCTCGAAAT
ACAGCTGCGG CTCGGGGGCT CACCAATGTC CGGTTTGTCT GCCGCGACGC CGCCGTTCTG
GAGGACGCCG CCGACTGGCA GGACTGTTTT GACTACGTGA CCGCTTTTGA TGCCATCCAC
GACCAGCCCC ATCCGGATCA CGCCCTGCGC GGCGTGCGGC ACATGCTCGC CCCAAACGGG
GTCTTTTCTC TGGTGGACAT CGCCGCTGAA AGCGATCTGG CCGGAAATCA GGTCCATCCG
ATGGGGCCGT TTTTGTACAC GGTCAGTCTC ATGCACTGCA TGCCAGTCGG CCTGGTCGGC
AATGGAGCCG GGCTGGGCAT GATGTGGGGC CGGCAAACAG CGCTGCGCAT GCTTGAAACA
GCCGGGTTCA CCCAGGTCAC CGTTCGAGAG ATCCCTGAGG ATCCGTTCAA CCACCATTTT
GAATGCCGCA GCCCCTCGTG A
|
|---|
| Protein sequence | MSTPSEAKRR EFAHTMSEIL NHGALNLAMG VGYRLGLFDV LCRLAAPASV SQIAEAAALD
PRYIREWLGV MTCGRIVELS HDTNGEDLFF LPPEHAAFLT RDSSSNMGVY TQELPLLAQS
AYDAVAAAFA TGEGVGYERY PDFQAFMAQL ADAKHEQTLL TTFLPSVAQG AIQDRLHYGI
RVCDVGCGRG TAVLLMAEAF PRSTFVGLDI DSATVDLARN TAAARGLTNV RFVCRDAAVL
EDAADWQDCF DYVTAFDAIH DQPHPDHALR GVRHMLAPNG VFSLVDIAAE SDLAGNQVHP
MGPFLYTVSL MHCMPVGLVG NGAGLGMMWG RQTALRMLET AGFTQVTVRE IPEDPFNHHF
ECRSPS
|
|---|
| |