Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1390 |
Symbol | |
ID | 8419219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1623784 |
End bp | 1624887 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645037965 |
Product | GTP-binding protein YchF |
Protein accession | YP_003198255 |
Protein GI | 258405513 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0012] Predicted GTPase, probable translation factor |
TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00313988 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.853679 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTTGT CCATTGGAAT AGTCGGGCTG CCCAATGTGG GCAAGTCCAC GCTGTTCAAT GCCCTGACCA AAGCCCAGAA CGCCCAGTCG GCCAATTATC CCTTTTGCAC GATTGAGCCG AACAAGGCGA TCGTTCCCGT CCCGGATTCC CGGGTCTCGG CGCTGTCCGA ACTGGTCAAA CCGCAGAAAA CTATCCAAGC CACGGTTGAG TTTATCGATA TCGCCGGTCT GGTCAAAGGC GCCAGCCAGG GCGAAGGGCT CGGCAACCAG TTTCTGGCCA ATATCCGTGA GTCCGACGCC ATCATGCACG TCGTGCGCTG TTTTGATGAT GAGGATGTGG CCCATGTTGA CGGGAGTGTG GATCCGGTGC GCGACGCCGA AGTCATTGAA ACGGAACTTA TCCTCGCCGA TGTCCAGAGC CTGGAACGCA AGCTCGACCG GGTCCGCAAG CAGGCCAAAA GCGGTGAGAA GCAGGCCCGG GCCTTGACGA CCACGGGCGA CGCCCTGTTG GAACACCTCA ATGCCGGACA TCCGGTGGTC ACTTTCGCCG ATAAAAATAA CGAGGCCGCC CGCCAATTGA TTAAGGAATT GGGGTTGTTG ACTGCAAAGC CACTCTTGTA TTGCGCCAAT GTTCGCGAAG ACGAACTCGA CGGCAGTGCG ACCCATTTTC AGGATCTGGA GGCTTACGCC CAGTCACGTC AGGCCCGGGT GATTCCTATT TGCGCGAAAA TGGAAGAAGA CCTCGCCGCC CTGGACGAAG AGGAGCAGGC CGAATTTCTT GCGTCCTATG GCGTTGAAGA CAGTGGCATC AAAAGGGTCA TTCAAACCGG GTACAATCTG TTGGGCCTCA TCAGCTATTT TACGGCCGGT CCTAAAGAAG TTCGGGCCTG GACCATCTGC GACGGTTGGA CGGCACCGCA GGCGGCGGGA GTGATCCATA GTGATTTTGA GCGCGGTTTT ATCCGTGCCG AGGTGGTCGA TTATGCAACG TATCTGGAGA AAGGCTCTGA GGCCAAATGC AAGGAAGCTG GAGTAATGCG TGTGGAAGGC AAGGAGTACG TTGTCCGGGA CGGTGACGTG GTCCATTTCC TGTTTAATGT CTAG
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Protein sequence | MSLSIGIVGL PNVGKSTLFN ALTKAQNAQS ANYPFCTIEP NKAIVPVPDS RVSALSELVK PQKTIQATVE FIDIAGLVKG ASQGEGLGNQ FLANIRESDA IMHVVRCFDD EDVAHVDGSV DPVRDAEVIE TELILADVQS LERKLDRVRK QAKSGEKQAR ALTTTGDALL EHLNAGHPVV TFADKNNEAA RQLIKELGLL TAKPLLYCAN VREDELDGSA THFQDLEAYA QSRQARVIPI CAKMEEDLAA LDEEEQAEFL ASYGVEDSGI KRVIQTGYNL LGLISYFTAG PKEVRAWTIC DGWTAPQAAG VIHSDFERGF IRAEVVDYAT YLEKGSEAKC KEAGVMRVEG KEYVVRDGDV VHFLFNV
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