Gene Dret_1390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1390 
Symbol 
ID8419219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1623784 
End bp1624887 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content56% 
IMG OID645037965 
ProductGTP-binding protein YchF 
Protein accessionYP_003198255 
Protein GI258405513 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0012] Predicted GTPase, probable translation factor 
TIGRFAM ID[TIGR00092] GTP-binding protein YchF 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00313988 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.853679 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTTGT CCATTGGAAT AGTCGGGCTG CCCAATGTGG GCAAGTCCAC GCTGTTCAAT 
GCCCTGACCA AAGCCCAGAA CGCCCAGTCG GCCAATTATC CCTTTTGCAC GATTGAGCCG
AACAAGGCGA TCGTTCCCGT CCCGGATTCC CGGGTCTCGG CGCTGTCCGA ACTGGTCAAA
CCGCAGAAAA CTATCCAAGC CACGGTTGAG TTTATCGATA TCGCCGGTCT GGTCAAAGGC
GCCAGCCAGG GCGAAGGGCT CGGCAACCAG TTTCTGGCCA ATATCCGTGA GTCCGACGCC
ATCATGCACG TCGTGCGCTG TTTTGATGAT GAGGATGTGG CCCATGTTGA CGGGAGTGTG
GATCCGGTGC GCGACGCCGA AGTCATTGAA ACGGAACTTA TCCTCGCCGA TGTCCAGAGC
CTGGAACGCA AGCTCGACCG GGTCCGCAAG CAGGCCAAAA GCGGTGAGAA GCAGGCCCGG
GCCTTGACGA CCACGGGCGA CGCCCTGTTG GAACACCTCA ATGCCGGACA TCCGGTGGTC
ACTTTCGCCG ATAAAAATAA CGAGGCCGCC CGCCAATTGA TTAAGGAATT GGGGTTGTTG
ACTGCAAAGC CACTCTTGTA TTGCGCCAAT GTTCGCGAAG ACGAACTCGA CGGCAGTGCG
ACCCATTTTC AGGATCTGGA GGCTTACGCC CAGTCACGTC AGGCCCGGGT GATTCCTATT
TGCGCGAAAA TGGAAGAAGA CCTCGCCGCC CTGGACGAAG AGGAGCAGGC CGAATTTCTT
GCGTCCTATG GCGTTGAAGA CAGTGGCATC AAAAGGGTCA TTCAAACCGG GTACAATCTG
TTGGGCCTCA TCAGCTATTT TACGGCCGGT CCTAAAGAAG TTCGGGCCTG GACCATCTGC
GACGGTTGGA CGGCACCGCA GGCGGCGGGA GTGATCCATA GTGATTTTGA GCGCGGTTTT
ATCCGTGCCG AGGTGGTCGA TTATGCAACG TATCTGGAGA AAGGCTCTGA GGCCAAATGC
AAGGAAGCTG GAGTAATGCG TGTGGAAGGC AAGGAGTACG TTGTCCGGGA CGGTGACGTG
GTCCATTTCC TGTTTAATGT CTAG
 
Protein sequence
MSLSIGIVGL PNVGKSTLFN ALTKAQNAQS ANYPFCTIEP NKAIVPVPDS RVSALSELVK 
PQKTIQATVE FIDIAGLVKG ASQGEGLGNQ FLANIRESDA IMHVVRCFDD EDVAHVDGSV
DPVRDAEVIE TELILADVQS LERKLDRVRK QAKSGEKQAR ALTTTGDALL EHLNAGHPVV
TFADKNNEAA RQLIKELGLL TAKPLLYCAN VREDELDGSA THFQDLEAYA QSRQARVIPI
CAKMEEDLAA LDEEEQAEFL ASYGVEDSGI KRVIQTGYNL LGLISYFTAG PKEVRAWTIC
DGWTAPQAAG VIHSDFERGF IRAEVVDYAT YLEKGSEAKC KEAGVMRVEG KEYVVRDGDV
VHFLFNV