| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1388 |
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| Symbol | |
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| ID | 8419217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1621987 |
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| End bp | 1622676 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645037963 |
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| Product | Shikimate kinase |
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| Protein accession | YP_003198253 |
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| Protein GI | 258405511 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0703] Shikimate kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00592582 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.782338 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCAAAC GGACATCCAC CGACCACTTT ATCCGCCGTG AGTTCTCTGT CACCGAGGCT
GACGCGACCA CAACCCACAG CCACCGTCGG CCGCGGACCC GTTTCGATTC CCAGAAGGAA
AACATCTTTC TCGTCGGATT GCGCGGCAGC GGCAAATCCA CTCTTGGTCA AGCCCTGGCC
GAACGTCTCG GCTTGCAGCT GGTGGACACG GATGCAGAGG TTGTCGCCAG AAGTAACGCA
TCAATCAGTG ATCTTGTGGC CGAGAAAGGA TGGGAAGGCT TCAGGCGCAT TGAGCATGAA
GTCCTGGTCT CGGTTTGTCA ACAGGCCGGG CAGGTTGTCG CCACCGGAGG CGGGATCGTC
CTTTTGCCCC AAAACAGGGA CCTGCTTGCT CAGCACGGCC AGGTCTTCTA TCTCATGGCA
GACCTGCCTT TGCTTGGAGA CCGGCTCAGG CAGGACCCAC AACAGACGAA CCGGCCGGCT
CTGGGTACCG CCCCGCCTGA AGAAGAATTG CGGGTCACGT TCCAGGAACG CGAACCCCTG
TATTTCCAGG TCATGAACCA TATCCTCCGG GCGGATAAAC CTGTAGACGG GCTCGTCCAG
GATGCCGTTA TGGCTTTGGG GCTAAGCGCC TGGGAGGCCG AGGAGGAACA CCTCAGCGAC
CCTGGGCAGG AAGGGTCACG TGATGACTGA
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| Protein sequence | MPKRTSTDHF IRREFSVTEA DATTTHSHRR PRTRFDSQKE NIFLVGLRGS GKSTLGQALA
ERLGLQLVDT DAEVVARSNA SISDLVAEKG WEGFRRIEHE VLVSVCQQAG QVVATGGGIV
LLPQNRDLLA QHGQVFYLMA DLPLLGDRLR QDPQQTNRPA LGTAPPEEEL RVTFQEREPL
YFQVMNHILR ADKPVDGLVQ DAVMALGLSA WEAEEEHLSD PGQEGSRDD
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