| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1307 |
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| Symbol | |
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| ID | 8419136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1531575 |
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| End bp | 1532852 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645037883 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_003198173 |
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| Protein GI | 258405431 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.168587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0355411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGGA GATTTTCTTT TTTTCGGATG CTCCCCTTCG GAGTCTGGGT GGTCGCGGCG
GTTGCCTCGC TGCTTTTGAG CGTCCCTGCG GCTCGGGCGC ATGGCATGGG TGAAACCGCG
GATATTGTTT TGGGAATGTC TGCGGCCTTT ACTGGACCCT CACGGAGTCT GGGGATTGAA
TTGTATCGCG GCGCCAACGC CTATTTTCAG AAAATCAATG CCAATGGCGG CGTCCACGGC
CGGCGCATCA GGATCAAGGC CTATGACGAC GGTTACGATC CCGATCCCGC CCTGCGCAAC
ACCATTCGTC TGGTCAAGGA AGACCATGTT TTTGCCCTCT TCGGGTACGT TGGTACGCCG
ACCACGACCC GTATCCTTCC TCTGCTGGAA AAATTCCGAG ACCAGCCCCT GCTCTTGTTT
TTTCCCATGA CCGGGGCGCA GCCCTTGCGC GAATCGCCCT ACCGCCAATA CATCTTCAAC
CTGCGCGCCT CTTATTTTCA GGAGACCCAG CGGCTGGTCG AGAGTTTTTT GAGTGTCGGA
CGGGAACGGA TCGGGGTCTT GTATCAGGCC GACGCCTATG GGCGAAACGG ATGGGACGGC
GTCCGCCGGA CATTGCGCGA ATACAACCTC CAATTGACCG GCGAGGCGTG CTACCGCCGC
GGCGCTACGG CTGCAACGGA TATGGGCGAA CAGATACGCA TTTTGCGCCA AAGCGGGGCT
GAAGCGGTGA TCACCGTAGG AGCGGCCCAA GCGTGTGCCG CTTTTATCCG TCAAGCCAGG
ACCCGGGGGT GGGAGGTGCC CATCGCCAAC CTCTCCTTCA CCCACGCCCA GCAGATGGCC
AACTTTTTGC TGCTCAATTC GGACACCTAC CCGGACCAAC TCACCCGGCG CGTTCTCAAT
GCCCATGTCG TTCCGAATCT CCAGGACACT TCGATTCCGG TGGTCCGCGA ATACCGGCGG
GCCATGGATG CGGCCAATGA AGACGTTCCC GGGCATCTGC TGGACACCCC CTATACGCCG
CACAGCTATG ACTATGTCAG TTTCGAGGGC TACCTCAACG CCAAACTCCT GGTGGAAATG
CTCCGCCGGA CCGAGCCTCC GCTGACTCCA AAACGGGTCC GCAAAAGTAT CTACAAGCAC
CGCCGCTATA CGATCGGCAT CGGATTGCCC TTGTTTTTCG GTCCCGAATA CAACCAGGGC
CTGGACATCA TTTTTTTCAG CACCCTCCGA GCCGGGCGGG TTGAACCTTT ACGCAACTGG
GATGCCTTCT CACCATGA
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| Protein sequence | MTRRFSFFRM LPFGVWVVAA VASLLLSVPA ARAHGMGETA DIVLGMSAAF TGPSRSLGIE
LYRGANAYFQ KINANGGVHG RRIRIKAYDD GYDPDPALRN TIRLVKEDHV FALFGYVGTP
TTTRILPLLE KFRDQPLLLF FPMTGAQPLR ESPYRQYIFN LRASYFQETQ RLVESFLSVG
RERIGVLYQA DAYGRNGWDG VRRTLREYNL QLTGEACYRR GATAATDMGE QIRILRQSGA
EAVITVGAAQ ACAAFIRQAR TRGWEVPIAN LSFTHAQQMA NFLLLNSDTY PDQLTRRVLN
AHVVPNLQDT SIPVVREYRR AMDAANEDVP GHLLDTPYTP HSYDYVSFEG YLNAKLLVEM
LRRTEPPLTP KRVRKSIYKH RRYTIGIGLP LFFGPEYNQG LDIIFFSTLR AGRVEPLRNW
DAFSP
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