Gene Dret_1220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1220 
Symbol 
ID8419048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1428505 
End bp1430286 
Gene Length1782 bp 
Protein Length593 aa 
Translation table11 
GC content54% 
IMG OID645037795 
ProductUncharacterized protein family UPF0324 
Protein accessionYP_003198086 
Protein GI258405344 
COG category[S] Function unknown 
COG ID[COG2855] Predicted membrane protein 
TIGRFAM ID[TIGR00698] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.21334e-09 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAACC AGGATGACAG CCAGAGCACT GTTCGCGAAC AGCGCATGAG CATGTGGAAA 
CAATTGTACA AGACCGAGGA CTATTGGGCC ATTTGGTTGG CCGGCTTGTT TTTTGTGGTC
GCGGTCGTTT GTGTCATGAC GTGGAAGCCG GCCGTTGAGG AGCTGCCGGA ATACCGTGCG
ATCATGAACG AGGAGATGGA CAAGGCCGGA TTCCGGACCA TCGCGTATAC CGAAGCTGAA
GATGCGATGG ATGGCATCCA GGCCAAAAAA GAGGGGTTCA CTTCGGTCAT CTATAATTTG
ACCAATCGTC CCAAAGGGTG GACGAGCAAC CCGCTCAACT CGATCTACAT GAGTGAAGAA
CAGGCAGCCA AAAAGCGCGC AGCTGCTGCC GATCGCTTTG AGGCGGCCAA AGAAGAACTC
GCTCAGGCAC GGGCGGAGGC GGAAAAAGCT GAAGCCGCAG CAGCTGCTGC GAATTTTGAA
GACAAGGAAC TCAACCAAAA GGCCAAGGCA TCCATCACGA AATGGCGTCA AGCCAAGTCG
TCTCTGTCAT CGGCGAAAAG CGCCGCCACT GCCCAACCCT ACAACCTCAT CCCCAGCCTG
ATCGTGCTCG GTATTGTGAT CATGCTCTTT TTCGCTATCG GGGCACGTTT TATCGGCATC
AACCTCCGGG ATTTCTTTAA AGGATTCCCG GTTATTTTTG TCCTGGCCTG TATAGCCTAT
TTGATCAGTA GTCAGGCCAC GCTGAAGGCA CTGGGACTTT CCTACGTGCT GTTTGCTCTG
GCCTTGGGAT TGATCATTTC CAACACATTG GGCGTGGCCC GTTGGATCAA AACTGCCGGG
CAAACCGAGT TCTTTATCAA AACCGGGCTT GTTCTGCTTG GGGCACGAAT CTTGATCGGG
CAGATCGCCC TGATCGGGAT TCCCGGTATC TTTGTCACCT GGGTTGTGAC ACCTATTGTC
CTGGTGACCA CATTCTGGTT TGGTCAGAAT GTGATCAAGA TGCCGTCCAA GGAACTGAAC
ATCACCATGT CTTCTGATAT GTGCGTTTCT GGTGTGTCCG CGGCCATTGC CAGTGCCTCG
GCCAGCGGTG CGAAAAAGGA AGAATTGACC CTGTCTATCG GCATGTCCAT GATCTTTGTG
GCCGTGATGA TTTTTGCACT GCCCGCTATT GCGAACATGA CAGGCATGCA CCCGGTTTGG
GCAGGCGCTT GGTTGGGTGG AACAGTGGAT AACACCGGAT CGGTTGTCGC CGCCGGTGAG
TTGATCGGTA TGGAAGCCAT GTATGTGGCG GCCACGATTA AAATGATCCA GAATGTGATG
ATTGGTGTGA TCGCTTTTGG CGTTGCCGCC TATTGGTGCT TGCGCGTCGA ACCGCAACGT
GCCTGCAAGC CTGGCGAAAC GCCCATGAAG CTGACCGCCG GCGGGGCGCT GATGGAAGTC
TGGTATCGCT TTCCCAAGTT TATCCTGGGC TTTATCGGCG CGTCGGTCAT TTTCTCGCTG
ATGCAGACCG GTGTGAATAT GGATTGGGGC CAAGCCATGG TGAATGATGG AATCCTGGCC
ATGGCAAACC GGTTCCGCGG TTGGTTCTTC TGCCTGGCCT TTGTCAGCAT CGGCTTGAGC
ATCAACTACG GGGAACTCAA AGAGCCCTTG CGTGGTGGCA AGCCCTTGTT GCTGTATGTC
TCCGGCCAGA CGTTGAACCT CATCTTGACT CTGTTCGTCG CCTGGCTCAT GTTTATGGTT
ATTTTCCGCG ACATCACTGA TATGTTGATG GCCGGCGCCT AA
 
Protein sequence
MANQDDSQST VREQRMSMWK QLYKTEDYWA IWLAGLFFVV AVVCVMTWKP AVEELPEYRA 
IMNEEMDKAG FRTIAYTEAE DAMDGIQAKK EGFTSVIYNL TNRPKGWTSN PLNSIYMSEE
QAAKKRAAAA DRFEAAKEEL AQARAEAEKA EAAAAAANFE DKELNQKAKA SITKWRQAKS
SLSSAKSAAT AQPYNLIPSL IVLGIVIMLF FAIGARFIGI NLRDFFKGFP VIFVLACIAY
LISSQATLKA LGLSYVLFAL ALGLIISNTL GVARWIKTAG QTEFFIKTGL VLLGARILIG
QIALIGIPGI FVTWVVTPIV LVTTFWFGQN VIKMPSKELN ITMSSDMCVS GVSAAIASAS
ASGAKKEELT LSIGMSMIFV AVMIFALPAI ANMTGMHPVW AGAWLGGTVD NTGSVVAAGE
LIGMEAMYVA ATIKMIQNVM IGVIAFGVAA YWCLRVEPQR ACKPGETPMK LTAGGALMEV
WYRFPKFILG FIGASVIFSL MQTGVNMDWG QAMVNDGILA MANRFRGWFF CLAFVSIGLS
INYGELKEPL RGGKPLLLYV SGQTLNLILT LFVAWLMFMV IFRDITDMLM AGA