| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1168 |
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| Symbol | |
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| ID | 8418996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1372662 |
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| End bp | 1373549 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645037743 |
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| Product | Flp pilus assembly protein CpaB |
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| Protein accession | YP_003198034 |
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| Protein GI | 258405292 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000250468 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAGAT TACGAGCTCT GATTCCCATT GCTTTGGCCT TGGTGATTGC CATTGCCGGA
AGCGTATTCA TTTACAACTG GATGCAGGAG CAGACCACAC GGCAGGATAC GGTCGAAAAG
GCCCGCGAAA AGGCTCCTTC GACTCAGGAG GTGGTTGTGG CTGCATTGGA CATTTCAGCG
GGCTCCCAGT TGACCGAAGA AATGCTGCAG ACCGGACAAT ACCTGAAAAA GAATCTCCCC
CCCGGCAGCT TTACCGACCC TGATCAATTA CTCGGCCGCG TTGCTCTGGC CCCATTCAAA
AAAAACGAAC CCATCGTTGA TCATCGCCTC GCGCCCACCG ATATCAAGTC TGGCGGCGTC
TCCGCTCTTA TCTCCAAAGG CAATAGAGCC GTCTCCCTTG GTGGAAATAA AGTTCTCGGT
ATCTCAGGAT TTGTCTTGCC CGGCAGTCGG GTTGATGTGA TGGTTACGTG GAATGATCCT
GACTCCGGCG AACAGATCAC CAAGCGTATC CTGGACAACG TCAAAATCCT GGCGACAAGC
ACCAAAATGC AGGAGACCGA GAGCGGTGGC ACAGCCCCAG TAGATGTCTA CACCCTGGAA
GTCACACCGG AAGAAGCTGA AATCCTAACG CACATCCGCA ATCAGGGCAG TCTGCAAATG
GCCCTGCGTA ACCCAACGGA CAACGAGCCG GTCATGACCG ATGGCGCTAC CGCGAAGGAT
TCCATGGCCT ACATGCTCAA GGAGAATGGG CTTTTGCAAC AGGCCAGAAA CAAGCCTGAT
GCTGATTCAG AGCAAAAGGT GGCCAAGGCC CCTACTTCGC CCCCACCGCC ACAACCGACT
GTTGTAGAGG TGATCCGAGG CAATAAGCTG GTTGAAATGA ATTTCTAA
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| Protein sequence | MGRLRALIPI ALALVIAIAG SVFIYNWMQE QTTRQDTVEK AREKAPSTQE VVVAALDISA
GSQLTEEMLQ TGQYLKKNLP PGSFTDPDQL LGRVALAPFK KNEPIVDHRL APTDIKSGGV
SALISKGNRA VSLGGNKVLG ISGFVLPGSR VDVMVTWNDP DSGEQITKRI LDNVKILATS
TKMQETESGG TAPVDVYTLE VTPEEAEILT HIRNQGSLQM ALRNPTDNEP VMTDGATAKD
SMAYMLKENG LLQQARNKPD ADSEQKVAKA PTSPPPPQPT VVEVIRGNKL VEMNF
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