| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1167 |
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| Symbol | |
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| ID | 8418995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 1371223 |
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| End bp | 1372590 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645037742 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_003198033 |
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| Protein GI | 258405291 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0398766 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACCA CCCCAATACC CAGGTCCGGG CTGCTCATTG CCGCGATCAT GGTTCTCACC
TTTTGTGTAT GGAGCATTCC GCAGGAACCC CAGGCTCAGG AGTTTCGGAT CATTCCGACG
AAAAACAGCG CCGATGACAG CATCATGCGC TCGCTTGAAC TGACCTATGG CAAATCTGTT
GTGCTCAAGT CCAACCGCGA AATAACCCGT GTTTCTGAAC CTGACCCCAA TGTACTCAAA
GACCCCCTGC TTATAGGCCC GAATGAACTC TACTTGACTC CCGCAGGAGC CGGAACTGCC
AATCTGATTC TCTGGCAGGG CAAGGAAGTG TCCACGGTTT ACGAAATCAC AGTCAAACAT
GACCTCTCCC GCCTTAAGCA GCGGTTGCAC GAACTTTTTC CCGAAGAAAA TGAACTCCGG
GTTTTGTCCA CCAACGAGTC CATCACCCTG TCCGGCCAAG TCTCAAGCGC TTCGGCCCTT
GATCAAATCA TGGCCCTGGC CGAGACCTAC GCCCCAGAGG GGGGGATCAA AAACCAAGTG
ACGGTGAAGG GAATTCACCA GGTCATGCTG GAAGTGAAAG TAGCTGAGGT CTCCCGCCAG
TCCCTTGATC GCCTCGGAAT AAACTTTGAT CTCATCAATG ACGCTGCAGA ATTCAGTATT
GGTTTTTTGG GTGCAGCCTC GGCCGGTTCA TCTGGAAGTG GGTCCTTCAA CTTCTGGCGA
AACGGGGACA ACGTTGACTT CAACGGACTT TTTGATTTCC TGAAACGAGA AGGACTGGCT
AAAATATTGG CCGAGCCGTC GCTGATTTCG ATGAGTGGAC AGACCTCCAG CTTCTTGGCC
GGCGGGGAAA TCCCGATTCC TGACGTTGAT TCAGATGGCA ACATTGGGGT GGAATTTAAA
TCCTACGGCA TTGAGCTTGC TTTTACCCCC ACCGTGATGA GCAAGGAACG AATCGCTATT
AAGGTTGTTC CGGTGGTTTC CGAGTTGGAC GAAGCCAGCG GCACCGTGAT CAATGGTGCG
CAGGTCCCAG GACTGAAAGT TCGCCGGGCG AATACAACCG TCGAATTGGG TGATGGCCAG
AGCTTCGCAA TAGCCGGCCT GCTAAGTGAA AATTCAGAAG AAACCGTGTC CAAATTTCCC
GGTCTGGGCG ATCTGCCTGT TTTGGGACCC TTGTTTACCA GCAAGTCCTT TACGTCCGAT
GAAACCGAAC TGGTTATCAT GGTTACGCCG AAACTGGTCA CTCCGCTTGT AGCCGAAAAG
CAGTCGCTGC CCACGGATTT CTTTATTCAT CCAACCGATG CGGAGTTCTA TCTGGGCGGT
CTGCTCGGGA GTTTAGACGG CGAGTTCGGC CACATGGTAG TAAAATAG
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| Protein sequence | MATTPIPRSG LLIAAIMVLT FCVWSIPQEP QAQEFRIIPT KNSADDSIMR SLELTYGKSV
VLKSNREITR VSEPDPNVLK DPLLIGPNEL YLTPAGAGTA NLILWQGKEV STVYEITVKH
DLSRLKQRLH ELFPEENELR VLSTNESITL SGQVSSASAL DQIMALAETY APEGGIKNQV
TVKGIHQVML EVKVAEVSRQ SLDRLGINFD LINDAAEFSI GFLGAASAGS SGSGSFNFWR
NGDNVDFNGL FDFLKREGLA KILAEPSLIS MSGQTSSFLA GGEIPIPDVD SDGNIGVEFK
SYGIELAFTP TVMSKERIAI KVVPVVSELD EASGTVINGA QVPGLKVRRA NTTVELGDGQ
SFAIAGLLSE NSEETVSKFP GLGDLPVLGP LFTSKSFTSD ETELVIMVTP KLVTPLVAEK
QSLPTDFFIH PTDAEFYLGG LLGSLDGEFG HMVVK
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