| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1055 |
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| Symbol | |
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| ID | 8418880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 1246362 |
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| End bp | 1247924 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645037627 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003197921 |
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| Protein GI | 258405179 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.144567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0392371 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGG ATCTGCGAAC AACGTCACGG CGCACGACGG CGACGTGGCA GAATCTGGAA
AACAAGATAC TGAAATACGA TATACATCCA TGGGTGTTTT TCGGCGGCGG GGCGGTTATC
ATCCTCGGCG TGGCTTTGAC CTTGATTGCA GGCGAGACGG CCTCGACCTT ATTCAGTTCC
GTGCAGACCT GGATTGCCAC ATATACCGGT TTCTTTTTCG TGCTGGTCAT GAACGTGGTC
CTGGTCTTCT GCTTTTTCCT CTTATTCACC AAAATGGCGT CGATGCGCAT CGGCGGAGAG
GACGCTGAGC CGGAATTCTC CACCATGGGG TGGTTCGCCA TGCTTTTTAG TGCTGGAATG
GGTATCGGGA TCCTTTTCTA CGGGGTGGCC GAACCCATGT TCCACTATGT GGCCAATCCC
CTCTCAGAAC CCGGTTCTCC TGAAGCGGCG CGCATGGCCA TGGAATTGAC CTTCCTGCAT
TGGGGCCTGC ACCCTTGGGG TATTTATGCC CTTGTCGGCC TCGGCCTCGC CTTCTTCGGC
TTTTCCGAAG GACTACCGCT TTCCATCCGT AATATTTTCT ATCCCCTGCT TGGCGACAAA
ATTTACGGCC CCATCGGTAA TTTGATCGAT GTCTTGGCCA CGGTGGCAAC GCTGTATGGG
GTGGCGACTT CCCTGGGGCT CGGGGTCCAA CAGGTCAATG CCGGACTGGC CCATTTGTTT
GGCATTCCGC AAAATCCCTG GGTTCAATGC GGCTTGATTG CCTTGATCAC CGCCATTGCG
ACCTGGTCCG TCGTTCGCGG CCTGGACGCG GGCATCAAAT TTTTGAGTGA ATTGAACATG
GCCGCCGCCG GGTTGCTGAT GCTCTTTGTC CTCTTGTTGG GGCCGACCCA ATTTATCCTT
AACGGTATTT TGGAGAATAT TGGGAATTAT ATTCAGGATT TTGCGCATCT TGCCACCTGG
AACGAGACCT ACACCAACGG CGAATGGCAA AACGGCTGGA CGGTTTTTTA CTGGGGCTGG
TGGATCGCCT GGTCTCCGTT TGTGGGCATG TTCATCGCCC GGGTTTCCTA TGGCCGGACC
ATCCGGGAAT ACCTGCTCGG CGTTCTGCTT GTTCCCGTCG CTGTGACCTT TGTCTGGATG
ACCGTGTTCG GCAACAGTGC TTTGTTCATC GAGCATTTCG GGGCTGGGGG ACTGGCCAAG
GCGGTACAGG AGAACATTCC TGTCTCCTTG TTTGTCTTTT TGGAACATTT TCCCTTGTCT
ATGCTGACCT CCCTTTTGGC AGTCGTTGTC GTCATCACGT TTTTTGTGAC CTCCTCTGAC
TCCGGGTCCA TGGTCATTGA CATCATCACC GCCGGAGGTA ACCCGGATCC GCCGACTCCG
CAGCGCCTGT TCTGGGCCGT TTTGGAAGGC GTTGTCGCTG CGGTCCTGTT GCTCGGCGGC
GGCCTGGTCG CCCTGCAGAC AGCCGCCATC ACAACCGGGT TGCCGTTTGC GGTGGTCATA
TTGATGATGT GCTGGGCCGT GTATCGCGGT CTGCATGACC ATTGGATGCG CTACTACGAC
TAA
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| Protein sequence | MSEDLRTTSR RTTATWQNLE NKILKYDIHP WVFFGGGAVI ILGVALTLIA GETASTLFSS
VQTWIATYTG FFFVLVMNVV LVFCFFLLFT KMASMRIGGE DAEPEFSTMG WFAMLFSAGM
GIGILFYGVA EPMFHYVANP LSEPGSPEAA RMAMELTFLH WGLHPWGIYA LVGLGLAFFG
FSEGLPLSIR NIFYPLLGDK IYGPIGNLID VLATVATLYG VATSLGLGVQ QVNAGLAHLF
GIPQNPWVQC GLIALITAIA TWSVVRGLDA GIKFLSELNM AAAGLLMLFV LLLGPTQFIL
NGILENIGNY IQDFAHLATW NETYTNGEWQ NGWTVFYWGW WIAWSPFVGM FIARVSYGRT
IREYLLGVLL VPVAVTFVWM TVFGNSALFI EHFGAGGLAK AVQENIPVSL FVFLEHFPLS
MLTSLLAVVV VITFFVTSSD SGSMVIDIIT AGGNPDPPTP QRLFWAVLEG VVAAVLLLGG
GLVALQTAAI TTGLPFAVVI LMMCWAVYRG LHDHWMRYYD
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