| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0998 |
|---|
| Symbol | |
|---|
| ID | 8418820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1171384 |
|---|
| End bp | 1173027 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645037567 |
|---|
| Product | pseudouridine synthase, RluA family |
|---|
| Protein accession | YP_003197864 |
|---|
| Protein GI | 258405122 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0237] Dephospho-CoA kinase
[COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family
[TIGR00152] dephospho-CoA kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.012801 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGTCACA GGGTCCCAAA CGATGTTCAA GAAGAGCACG CCTTTGTCGT TGAGGCAGGC
GAGGCCGGAA AACGGTTGGA TAAGTTTTTG AGTGACCGTC TTGCCGATCT GGGCGTCTCC
CGCTCTCGGA TCAGCCAGTG GATTCGGCAG GAACGGGTGC GAGTCGCAGG GGCACTGTGC
CTGCAGGGCA AAACCAAAGT CCTCAATGGT CAAAAAGTGG TCCTGCTGGC CCCGTCTCTG
CAGAGCGGGA TCAAGCCCGA AGTCGGCCCG GTCGAGGTGG TCTACAGCGA TCCGGATGTG
GTGGTCGTGA ACAAGGCGGC CGGAGTCACG GTCCATCCCG GCACCGGGTG TGAATCCGGA
ACCCTGGTTC ACCATCTGGC AGCGTTGTAT CCGGAACTCG CCCGCTTTGA CGGGGAGCGT
CCCGGCGTGG TCCACCGTTT GGACAAGGAT ACTTCAGGCC TGCTCACCGT GGCCCTCAAT
GAATCCGCCC GGCTGGCACT GACGCGGAGT TTTGCCAGAC GGGAGGTGGA CAAGGAGTAT
CTGACGCTTG TCCATGGACG CCCTGAGGCC GAAGGCACGG TGGATCATCC CCTGGGTCGG
GACCCGCAAA GCAAGATCCG TATGGCCGTC GTTCCTCGCG GGGGCAAGGA GGCCCTGACA
CGCTTCAAAA GGGTCTGGAC CAGTCCGGAT GGCAGGGTCA GCCTGCTTCG AGTGCGCATT
TTGACCGGGC GAACCCATCA GATCCGGGTC CATATGGCGT ATCTGGGTTT TCCTCTGGTC
GGAGATGCGC TCTATGGTCC CCAGGCCCAG GCCGCATTTC AGCGCAGCCG TCCCCTTTTG
GCCCGTTTGG CCAAACACCA TATGCTCCAC GCGTGGCGCC TGGCATTTCC CCATCCCCGG
AGCGGGCGAA TGGTGTGTTG CGAGCAGGCC ATGCCCAAGG CGATGTGGCG GCTTGTTCTC
GGATGCGGCA GGCGTGTCCA GCGGGTTGGT CTGACCGGGA TGCCTGGCTG CGGCAAATCA
GCCTTGCTCA GCGAACTGAG CGACCGTGGT GTGTTGACCT GGAGCGCGGA TCAGGAAGTG
CGGGCGCTCT ATGCTCCGGG AGGCGACGGG GCGGACTTGT TGGCGCGCCG CTTCGGCGAC
GAAATCCTGG ACGACAGCGG CGGAGTGGAT AAAAAAGCCT TGCTGGCCCG GATGCAATCC
CGGCCGGGAC TGCACCGCGA GGTCGAAGAG CTGATCCATC CCCTGGTCCG ACACCGGCTG
GAGGCGTTCT GGACGCAGAC CGGAAATTTC CGATTGGCTG TAGCGGAAGC GCCATTGCTT
TTTGAGGCTG GGTGGTCCGC AGCCAGGGAA TTTGATGTGG TCGTGGGGGT GCATTGTTCC
CGCCGGGTTC GTCGTGCCCG TCTCCAGGCG TCGCGTGGCT GGTCCGAGAG CATGCTTTCC
GGGTTGGAGT CCTGGCAGTG GACGCCGAGG GCCAAACTGT CCCGCTGTCA GTTTATAGTG
CCCAATGATG AGGACAGGCA TATGTTGGCC CGGCGGGCGG AGATGCTTAT GGAATTGCTC
CGCAGACGCC GCTTGCGGCA GATACGGTCT TTGTGGCAGG ACTTGCAAGT CTACCGGCAC
AGCAGGGCCG TTCTCGACCC GTGA
|
|---|
| Protein sequence | MRHRVPNDVQ EEHAFVVEAG EAGKRLDKFL SDRLADLGVS RSRISQWIRQ ERVRVAGALC
LQGKTKVLNG QKVVLLAPSL QSGIKPEVGP VEVVYSDPDV VVVNKAAGVT VHPGTGCESG
TLVHHLAALY PELARFDGER PGVVHRLDKD TSGLLTVALN ESARLALTRS FARREVDKEY
LTLVHGRPEA EGTVDHPLGR DPQSKIRMAV VPRGGKEALT RFKRVWTSPD GRVSLLRVRI
LTGRTHQIRV HMAYLGFPLV GDALYGPQAQ AAFQRSRPLL ARLAKHHMLH AWRLAFPHPR
SGRMVCCEQA MPKAMWRLVL GCGRRVQRVG LTGMPGCGKS ALLSELSDRG VLTWSADQEV
RALYAPGGDG ADLLARRFGD EILDDSGGVD KKALLARMQS RPGLHREVEE LIHPLVRHRL
EAFWTQTGNF RLAVAEAPLL FEAGWSAARE FDVVVGVHCS RRVRRARLQA SRGWSESMLS
GLESWQWTPR AKLSRCQFIV PNDEDRHMLA RRAEMLMELL RRRRLRQIRS LWQDLQVYRH
SRAVLDP
|
|---|
| |