Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0843 |
Symbol | rho |
ID | 8418662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 999635 |
End bp | 1000882 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 645037412 |
Product | transcription termination factor Rho |
Protein accession | YP_003197712 |
Protein GI | 258404970 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000000858809 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0802102 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCTAT CCGAGATGAA AAGGAAATCC ATGGCCGAAC TCATGCAGTT GGCCAAGGAG TATAAAGTCG AAAACCCAAG CGGTCTTCGC AAGCAGGAAC TGATTTTTGC CATCCTCAGT TCCTGTGCTT CGCAAAACGG CTCGATCTAT GGGGAAGGCG TGCTGGAGAT TTTGCCCGAC GGGTTCGGCT TTCTTCGCTC CCCCATGTAC AGCTATATTC CGGGACCGGA CGATATTTAC GTCTCCCCGT CGCAGATCCG CCGCTTCGGC CTGCGCAAGG GTGACGTGGT CTCCGGGCAG ATCCGCCCGC CCAAGGAAGG GGAGCGGTAT TTCGCTTTGC TCCGGGTACA GCAAGTTGGG TTTGCCACTC CAGAAGAATC CAAGAACCTA GTCCTGTTTG ATAATTTAAC GCCGATTTAT CCGGACCAGC GCTTTGTCAT GGAAACTGGG GCGGAAAGCT ACTCCTCGCG GGTTGTGGAT CTGCTGGCCC CCATAGGTAA GGGACAGCGC GGGCTCATAG TAGCCCCGCC ACGCACCGGA AAAACGATGC TTTTGCAAAG TATCGCCAAC TCCATTACCG CCAACCACCC TGATTCCTAT CTTATTGTGC TCCTGATCGA CGAACGACCT GAAGAAGTGA CGGATATGGA GCGTACCGTC GACGGCGAAG TTGTCAGTTC GACGTTCGAC GAGCCTCCCC AACGTCATGT CCAGGTGGCG GAAATGGTTT TGGAAAAAGC CAAACGCCTT GTGGAACGCA AAAAAGATGT CGTTATCCTC CTGGACAGTA TCACCCGTTT CGGTCGAGCC CACAACGCGA TCATTCCTTC GTCAGGACGG GTCCTCTCTG GCGGTCTGGA CTCCAACGCC CTGCAACGAC CGAAGCGTTT TTTTGGGGCT GCGCGGAATA TCGAGGAAGG CGGGAGTCTG ACCATTATCG CTACGGCGCT TATCGATACC GGATCGCGCA TGGATGAGGT CATCTTTGAG GAATTCAAGG GCACCGGAAA TATGGAAATT TACCTGGATC GCCATCTGGC CGACAAGCGC GTCTTTCCGG CCATTGATAT CAACCGTTCC GGCACCCGCA AGGAGGACCT GCTTTTGGAC GAGAACGTCT TGAACCGGGT TTGGATATTG CGTAAGCTTC TGGCTCCCAT GAATTCAGTG GAGAGCATGG AGTTTCTCCT GGACAAAATG CGCGGCACAA AGAGCAACCG CGAGTTTCTC GATATGATGA ACAGTTAG
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Protein sequence | MNLSEMKRKS MAELMQLAKE YKVENPSGLR KQELIFAILS SCASQNGSIY GEGVLEILPD GFGFLRSPMY SYIPGPDDIY VSPSQIRRFG LRKGDVVSGQ IRPPKEGERY FALLRVQQVG FATPEESKNL VLFDNLTPIY PDQRFVMETG AESYSSRVVD LLAPIGKGQR GLIVAPPRTG KTMLLQSIAN SITANHPDSY LIVLLIDERP EEVTDMERTV DGEVVSSTFD EPPQRHVQVA EMVLEKAKRL VERKKDVVIL LDSITRFGRA HNAIIPSSGR VLSGGLDSNA LQRPKRFFGA ARNIEEGGSL TIIATALIDT GSRMDEVIFE EFKGTGNMEI YLDRHLADKR VFPAIDINRS GTRKEDLLLD ENVLNRVWIL RKLLAPMNSV ESMEFLLDKM RGTKSNREFL DMMNS
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