| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0831 |
|---|
| Symbol | |
|---|
| ID | 8418649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 983387 |
|---|
| End bp | 984940 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645037399 |
|---|
| Product | transcriptional regulator, NifA subfamily, Fis Family |
|---|
| Protein accession | YP_003197700 |
|---|
| Protein GI | 258404958 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0724194 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.196373 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGT GCATGCCGTT TCTCAATACC CTCAAGCAGG TTTTGAGCGA ACTCGATCCC
CAAAGCCCGT TGCAAACCGG TTTGCAACGG CTTTTGGATA TCATTGCCGC CAACCACGGG
TACGAACGGC TCTCTCTGGC CATCTTCGAC CCCCAGACCG CAACCCTGCA ATTCCATCTC
AACTACGGAG ACGACGCAGC TGCGGACGTG CGCTACGCTC CGGGCCAGGG TATTTCCGGC
CAGGTACTGG CCTCGGGGTC ACCGTCTATT ATTCCGCGCA TGGCGGACAA CCCCGAATTC
CTGAACCGCG CCTTTGGCCG TCCTCCGGAC GAACTGGCCG CGTGCGCCTT TATCTGTGTG
CCCATTTTGT TGCCAAGCTC TGCCGAAGAG GGCAAAAGCC AGGAGACCAT CGGTGTCTTG
AGCGCTGACC TGGCCACCGC TCCCAAGGAA AAGCTCGAAG AGCACTGCCG GTTTCTGGAA
ACCTTGGCCG GGATTATCGC CCGGCAGGCC GCCCATCTCC AGGACGAACT CGCCCGGCGC
GAACAATGGC AACGCCTCGG ACTTTTGCAC CAGGACGGCG ATTTGCTCCA GGTCGACACC
GAAGAGATCA TCGCCTTCTC CAAGACCATG GGCATGGTCC TGCAACAGAT CTATCAGGTC
GCACCGAGCC GGGCCACGGT CTTACTGCGC GGCGAATCCG GGACCGGGAA AGAACTCCTG
GCTGAGGCCA TCCACCGCGC CAGCCCCCGC CGTGACAAGC CCTGCATCAA GCTCAACTGC
GCTGCGCTTC CTGCAGACCT GTTGGAAAGC GAATTGTTCG GTCACGAAAA AGGGGCCTTT
ACCGGGGCGG TCAGCGCCAA AAAAGGCCGC TTTGAAATGG CCCATGAAGG GACGCTTTTT
CTGGATGAGA TCGGCGAGCT CAGTGCCGAG GCCCAGGCCA AACTCCTGCG GGCCATCCAG
GAGGGCGAAA TCCAGCGCCT GGGCAGCGAA CGCCCCATCA AGGTCGATGT CCGCCTCGTT
TGCGCCACCC ACCGTCCTCT GGAAATGCTC CTTGAAGATG GCAGCTTTCG CGAGGATCTG
TATTACCGGA TCAATGTTTT TCCGGTTTTC ATCCCCTCCC TGCGCGAGCG CCGCGACGAT
ATCATCCCTT TGACCGAACA TTTCCTGTCC TATTTCGCCC GGGAGTACCA AAAAAGTATC
AAGCGGGTCT CCTCACCGGC TATCGATCTC CTCGTCCAAT ACCATTGGCC GGGAAACGTC
AGGGAATTGC GCAACTGCAT TGAACGCGCT GTTTTGTTAT GCAACGAAGA TGTTATCCGG
ACCTACCATC TGCCGCCGTC ATTGCAGACC GCTGAGAGTT CGGCCACGGA CACCGATCTC
TCCTTCGGCG AGGCTGTGGC CCGTTTCGAA CAGGAACTCC TGGTCGAGGC GCTGAAAAAA
ACCAAAGGAA ATATGCTCCA GGCGGCCCGC AATCTGCGCG CCAGCTACCG GATCATCAAT
TACAAGGTCA AAAAATACGG GATCGACGTC AAACGGATCT CAGGAAAAAA ATAA
|
|---|
| Protein sequence | MTECMPFLNT LKQVLSELDP QSPLQTGLQR LLDIIAANHG YERLSLAIFD PQTATLQFHL
NYGDDAAADV RYAPGQGISG QVLASGSPSI IPRMADNPEF LNRAFGRPPD ELAACAFICV
PILLPSSAEE GKSQETIGVL SADLATAPKE KLEEHCRFLE TLAGIIARQA AHLQDELARR
EQWQRLGLLH QDGDLLQVDT EEIIAFSKTM GMVLQQIYQV APSRATVLLR GESGTGKELL
AEAIHRASPR RDKPCIKLNC AALPADLLES ELFGHEKGAF TGAVSAKKGR FEMAHEGTLF
LDEIGELSAE AQAKLLRAIQ EGEIQRLGSE RPIKVDVRLV CATHRPLEML LEDGSFREDL
YYRINVFPVF IPSLRERRDD IIPLTEHFLS YFAREYQKSI KRVSSPAIDL LVQYHWPGNV
RELRNCIERA VLLCNEDVIR TYHLPPSLQT AESSATDTDL SFGEAVARFE QELLVEALKK
TKGNMLQAAR NLRASYRIIN YKVKKYGIDV KRISGKK
|
|---|
| |