| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0562 |
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| Symbol | |
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| ID | 8418374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 676151 |
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| End bp | 677503 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645037130 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003197437 |
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| Protein GI | 258404695 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACAA AGGAAATATG GAAATGGATT GGTTTGGCAT TGATCGGGTG TTTTCTTCTG
CCCGCCGCGG CGCTTGCCCA AGATGGACAG ATGCAGACCC CGCTGAACAA GAGCGTGGTC
TCCACGCTCA AAAACAACCC GCGCCTCGAT GTCCTCAAAA ACAATCGTGA AGCGGTCAAG
CACGATGTGC GCAAAGCCAA GGGCGGCTAT CTCCCTGATC TCGACGCCCG GGTCGGCTTC
GGTGTCGACC GTCACAGCGA CACCGTGAGT CGGGCTACTG ATTACTACAA CGATTGGGAC
AAACGTGAGG AATACAGCCT GGTCCTGCGC CAACTCCTCT GGGACGGCTG GGAGACCTCA
AGTTTTGTCG GTGTGAGCGA GTCCAAACTC GATTCTGTCC AGCACCGGGT TTTTGATAAT
GCTGAATCCC TGGCCCTCGA CGCGGTCATC GCCTACCTCG ATGTCTACCG CCAGCGAGAG
TTGGTCCGTT TTGCTGAAGA CAATATGGAT GCGCACAAGC GTATCCTGCG CTCCCTGCGC
GAGCGCCAGG AAATGGGAGC TGGCAGCCTT GCTGATGTCC GCCAGACTCA GAGCCGTCTG
TCCCGCGCCC GTTCCTCCCT GGCGGATGCC CAGGGCGGAC TCCGTGTTGC TCTGGCAAAT
TATCGCCGGG TTGTGGGAGA AGCCCCTCCT GAAGACATGA TTCTCCCGGT CAAGCCGATA
GGTGCCGTTC CAGAGACACA ACAAACAGCT TTAAAACGGA GCCGAACCGG CAATCCCAAA
CTTTCGGCAG CGACCTCGGA CATCGAGACC GCACGGCAGA ATATGCGACT GAGCCAATCC
AAACTCTATC CCAATGTCTA CGCCGAGGCG AGCACCTCGT ACGATCATTG GGTGGAAAGT
TCTCGAGACT GGGAACACAA CACCGCGCTT ATGCTGCGGA TGAACTGGAA CCTGTATAAT
GGCGGTTCGG ATGTGGCCGA ACAGGATGCA GCCATGTACC GTATGCGCCA GGCGGCTGCC
GACCGCTACG ACCTCATGCT TGAAATCGAG GACGAAACCA GAGCGACCTG GAGCCGGTAT
CAGACCGCCC AAGACAAGAT ACAGAACTTC CGTCAAGCCA AGAAATACAA CCAGCAAACC
CTTGAAATGT ACCTGGAACA ATTCAATGTC GGCCAGCGGA GTCTGCTGGA TGTGCTCGAC
GCTGAAAACG AATACTTCCA GACTTCCGGT CTGCTGGTCA CTTCCCAGGC GAACGAGATC
ATCGCTGCTC ACAGACTCCT GGCCCTGGAA GGTTCATTGC TCTCCGCTCT GTCCGTCGAC
CCCGCTTTAT ACACTGGACC ACCGAATAAA TAG
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| Protein sequence | MNTKEIWKWI GLALIGCFLL PAAALAQDGQ MQTPLNKSVV STLKNNPRLD VLKNNREAVK
HDVRKAKGGY LPDLDARVGF GVDRHSDTVS RATDYYNDWD KREEYSLVLR QLLWDGWETS
SFVGVSESKL DSVQHRVFDN AESLALDAVI AYLDVYRQRE LVRFAEDNMD AHKRILRSLR
ERQEMGAGSL ADVRQTQSRL SRARSSLADA QGGLRVALAN YRRVVGEAPP EDMILPVKPI
GAVPETQQTA LKRSRTGNPK LSAATSDIET ARQNMRLSQS KLYPNVYAEA STSYDHWVES
SRDWEHNTAL MLRMNWNLYN GGSDVAEQDA AMYRMRQAAA DRYDLMLEIE DETRATWSRY
QTAQDKIQNF RQAKKYNQQT LEMYLEQFNV GQRSLLDVLD AENEYFQTSG LLVTSQANEI
IAAHRLLALE GSLLSALSVD PALYTGPPNK
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