| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0491 |
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| Symbol | |
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| ID | 8418297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 597468 |
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| End bp | 598439 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645037053 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_003197366 |
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| Protein GI | 258404624 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.444271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAAA AGAAACCGGC CTTTCCCCAG CAACACGGCT TGCTCATTCT GAACAAACCC
CAGGGACCGA CCTCCTACGG CTGTCTGGAC CAGATCAAAC GCCATCTCGG ACAGCGCAAG
ATCGGCCACG CTGGGACTCT CGACCCCATG GCCAGCGGGG TCCTGGTTGT ATTGCTCGGG
CAAGCCACCA AACTCGCCTC CTATATCAGC GGCGGGGACA AAATATACCG CGGTCACCTG
CGTATCGGCC TGGCAACCGA TACGTACGAC ATCGAAGGGG CCGTGGAACA CCAATTTCCC
TGGGAACACA TAACACCTGA GGATGTAGGC AAGACGGTCG CCGAATGGCG CGATCTCCTG
GAACAGGAGG TCCCAGCGTA TTCGGCGGCC AAACACAAGG GCAAACCACT GTACGAACTC
AAGCGTACCG GGCAGGAAGT GCCGGTGAAG ACCAAGCCGG TGGAGATCTT TGACGCCCAG
GTCCTTGACA TTGCCCTGCC GGATGTCCAA TTTCGGGTCT CGTGTTCCCA AGGAACGTAC
GTGCGCTCCC TGGCCCACAG CCTGGGGAAG CGACTTGGCT GCGGCGCGAC GCTTACCGCC
CTGGTCCGGG AATTCAGCCA TCCGTTCGCT CTCGAACAGG CCTATTCGCT AGAAGAGGTC
CTCGGCGAAC CGGACTCTCT GGCTGAGAAG ATCCTGCCTC TGGACAAATG CCTGCCGCAC
TGGCCCTCGT TGCCTCTGGA CGGAAGCCAA GCCCGGGAAG TCCAAAATGG GACTCGTTTG
CTCGTCCGGG ACGTGACAGC CGATTTTGCT GTCCACCCGG GGGACCGGGC CCAGTTTGTT
GACGCCACAG GGCGTTTATT GGCGCTTGTC GAGGCCAAAT GGGAAGGACC AGTACTGGTC
TGGACAATCC TGCGCGGGTT CCAGCCGCCC AAAAAACATG ACGTCGCGCC CGAACGAACA
AACCACGAGT AG
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| Protein sequence | MAKKKPAFPQ QHGLLILNKP QGPTSYGCLD QIKRHLGQRK IGHAGTLDPM ASGVLVVLLG
QATKLASYIS GGDKIYRGHL RIGLATDTYD IEGAVEHQFP WEHITPEDVG KTVAEWRDLL
EQEVPAYSAA KHKGKPLYEL KRTGQEVPVK TKPVEIFDAQ VLDIALPDVQ FRVSCSQGTY
VRSLAHSLGK RLGCGATLTA LVREFSHPFA LEQAYSLEEV LGEPDSLAEK ILPLDKCLPH
WPSLPLDGSQ AREVQNGTRL LVRDVTADFA VHPGDRAQFV DATGRLLALV EAKWEGPVLV
WTILRGFQPP KKHDVAPERT NHE
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