| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0489 |
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| Symbol | |
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| ID | 8418295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 594863 |
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| End bp | 597091 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645037051 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_003197364 |
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| Protein GI | 258404622 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.554464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTATGA GCAATATATT TGGCAGCACC AGCGTCAGCA CCACATTGCA GGGACAGGAC
ATTCTCATCG AAACAGGACG CTTGGCCAAC CAGGCCAACG GTGCCGTCTG GGTCCAGAGC
GGAGGAACCG TGGTCCTGGT CACTGCCGTG ACCCAGCCCG TCACTCGCGA CATCGACTTT
ATGCCGCTGG TGGTGGACTA CCAGGAAATG TCCTATGCTT CGGGCCGTAT CCCCGGCAAT
TATTTTCGCC GCGAAATCGG ACGGCCCAGC GAGCGTGAGA CTCTGGTCTC ACGCCTGATC
GACCGCCCCA TCCGTCCCTT GTTCCCCGCC GGATTCCGGG ATGAAGTGCA GATCATCGCC
ACCGTCCTTT CCGCAGCCCC GGAGGTCAAT CCCGATGTCC TGGCTCTGAC CGGGGCCTCG
GCGGCGATGC ACATTTCTGA CATCCCCTTT GACGGCCCTA TCGGCGGTAT CCGCGTCGGC
CAGGTCGATG GCGAGTTCGT GCTCAACCCG TCACAAAACG AGTTGGAAAA CAGCGACCTC
AACCTCGTCC TGGCTGGAAG CCGCGACGCG GTGACCATGG TTGAAGGCGG CGGCAATTTT
GTTCCTGAAG ACCGCATGGC CGAAGCCATC ACCTGGGGCC ACGAACAGGT TCAGGCGCTG
CTGCAACTCC AGGACGAGTT GCGGGAGAAA ATCGGCGCAC CCAAGATTGC CGTTCAGGCC
CCTGAGGCAG ACACCGAACT CGAGTCCCGC GTCCACGACC TGGCCGGTTC CGAATTGGCC
GAAGCCTTGC AAGTTCCCAA CAAATTGGAG CGCAAGACGG CCAAAAAAAC GGTCAAAGAC
AAGGTTATGG CTACCCTGGA GCAGGAATTC GCTGAAGAGC CGGAACGCTT GAAAGGCGCA
GGCAAGATCT TTGAAGCCCT GGAAAAAGAT ATTGTCCGCA AACGGGTCAA AGAAACGAAG
ACCCGCATCG ACGGCCGGGA CCTGACCACA GTCCGGGATC TGAATATCGA AACAAGCTCT
CTGCCGCGTA CCCACGGCTC GGCCATTTTC GCCCGCGGCG AAACCAAGGT CCTTTCCGTG
GCCACTCTTG GCAGCTCCCG CGACGAGCAA CGCATCGAGA TGCTCGACGG CGAACTCAAC
AAGCGGTTCA TGCTCCACTA CAATTTCCCG CCGTATTGCG TGGGCGAAGT CAAAATGATG
CGCGGTCCGG CCCGTCGGGA AATCGGACAC GGAGCCCTGG CCGAACGCGC TCTGACCCCG
GTGTTGCCCA CGGAAGATGA ATTCCCGTTC ACCATGCGTG TCGTGTCCGA AGTCATGGAA
AGCAATGGCT CTTCCTCCAT GGCCACGGTC TGCGGCACCA GCCTGTCCCT CATGGACGCC
GGTGTCCCGG TCAGCGCCCC GGTGGCGGGC ATCGCCATGG GCCTTATCAA GGAAGAGGAC
GAATTCCTTG TCCTCACGGA TATCCTGGGC GACGAAGACC ACCTCGGTGA TATGGACTTC
AAAGTCGCCG GAACAGCTGA AGGAATCACC GCCATCCAGA TGGACAGCAA AATTGCCGGG
ATCCCGCCCG AAGTTCTCAA GCGGGCCCTC AACCAGGCCA TGGACGCCCG GTTGCACATC
CTGGACAATA TGAACACCGT CTTGCCGGCG GCGCGGGCTG AACTCTCCGA GCACGCCCCG
CAGTTGGAAA TCGTCGAGGT GGACACCGAG CGGATCAAAG ATGTCATCGG TCCCGGCGGC
AAGAACATCA AGGCCATCAC CCAGGCCACT GGCGCCTCCA TCGACATCGA GGATTCGGGC
CGGATCTCGA TCTTCGCCCC CAATCAGCAG GCGTTGCAGG AAGCGGTGGA CATGGTCCTG
TTTTACGATC AGAAGGCCGA AGTCGGTAAA GATTACGAAG GCACGGTCAA GCGCATCATG
AACTTTGGCG CGTTTGTGGA AATCCTGCCC GGTCTGGAAG GCTTGTTGCA CATCTCGCAG
CTCGACCAGC AGCGCGTGGA ACAAGTCGAG GATGTCGTCA AGGTCGGCGA CTCCGTGAAG
GTCAAGGTCA TTGAACAAAG CGGTGACGGC AAAATCCGGC TGAGCCGCAA GGCGGTTCTC
ATGGAAGAAC AGGGACTGAC CTTTGACCTC GCCGCAGAGG CGCGCCCCAG CGGCCCCAAA
AAAGGCCCCG GAGGCGGAGG CCGCGGCGGA CGGGACAACG GTCCCCGCGG AGGCGGCGAC
CGCCGGTAA
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| Protein sequence | MTMSNIFGST SVSTTLQGQD ILIETGRLAN QANGAVWVQS GGTVVLVTAV TQPVTRDIDF
MPLVVDYQEM SYASGRIPGN YFRREIGRPS ERETLVSRLI DRPIRPLFPA GFRDEVQIIA
TVLSAAPEVN PDVLALTGAS AAMHISDIPF DGPIGGIRVG QVDGEFVLNP SQNELENSDL
NLVLAGSRDA VTMVEGGGNF VPEDRMAEAI TWGHEQVQAL LQLQDELREK IGAPKIAVQA
PEADTELESR VHDLAGSELA EALQVPNKLE RKTAKKTVKD KVMATLEQEF AEEPERLKGA
GKIFEALEKD IVRKRVKETK TRIDGRDLTT VRDLNIETSS LPRTHGSAIF ARGETKVLSV
ATLGSSRDEQ RIEMLDGELN KRFMLHYNFP PYCVGEVKMM RGPARREIGH GALAERALTP
VLPTEDEFPF TMRVVSEVME SNGSSSMATV CGTSLSLMDA GVPVSAPVAG IAMGLIKEED
EFLVLTDILG DEDHLGDMDF KVAGTAEGIT AIQMDSKIAG IPPEVLKRAL NQAMDARLHI
LDNMNTVLPA ARAELSEHAP QLEIVEVDTE RIKDVIGPGG KNIKAITQAT GASIDIEDSG
RISIFAPNQQ ALQEAVDMVL FYDQKAEVGK DYEGTVKRIM NFGAFVEILP GLEGLLHISQ
LDQQRVEQVE DVVKVGDSVK VKVIEQSGDG KIRLSRKAVL MEEQGLTFDL AAEARPSGPK
KGPGGGGRGG RDNGPRGGGD RR
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