Gene Dret_0421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0421 
Symbol 
ID8418226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp515501 
End bp517525 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content62% 
IMG OID645036982 
Product4Fe-4S ferredoxin iron-sulfur binding domain protein 
Protein accessionYP_003197296 
Protein GI258404554 
COG category[C] Energy production and conversion 
COG ID[COG1148] Heterodisulfide reductase, subunit A and related polyferredoxins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.46069 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTCA AAATCGGAGT CTATGTCTGC CACTGCGGCA CGAATATCGC CAGTAAGGTG 
GACTGCCCTG AGGTAGCGCG TTTCGCCGCT GGCCTGCCCG GCGTGGTGGT GGGCCGGGAC
TATAAATTCA TGTGTTCCGA TCCGGGGCAG GACATGATCA TCAAAGATAT TCAGGAACTC
GGCCTTAACC GCGTCGTTGT TTCCTCCTGC TCGCCGCGCC TGCACGAAAA GACCTTTCAA
AAGGCGTGTC TCCGAGCCGG GCTCAACCCC TTTCTCTTCC AGATGACCTG CATCCGGGAA
CATTGCTCCT GGGTCACTGC CGATCCGGCC GAGGCCACTC GCAAGGCCAA GCACCTCGTG
GCCGCAGCCG TCAATCGGGT CCAGCGCCAC GCCAAACTCT ACGCCCGGCA GGAACACGTC
CATCCCGATG TCCTGGTCGT CGGCGGCGGC ATCGCCGGCA TCCAGGCCGC CCTGGATGTG
GCCAAGTCCG GACACCGGGT CCACCTGGTG GAAAAAGCCC CGTCCATCGG CGGGCACATG
GCCCAATTCG ACAAGACCTT CCCGACCCTG GATTGCGCGG CCTGCATCTC AACCCCCAAA
ATGGTCGCCG TGGCCCAAGA GCCGAACATC AACCTCATGA CCTACGCGGA AGTCCAGGAA
GTCAAAGGGT TTGTCGGCAA TTACGAGATC ACCGTCCGCC AGCACCCCCG GTACATCGAC
GCCACCAAGT GCACCGGCTG TGGGCTGTGC CTGGAAAAAT GCCCGACCAA GGTTCCCAGC
GAATTCGAGG AAGGACTGGG CATGCGCAAG GCCATTTACC GCTATTCCCC GCAGAGCGTC
CCGGCCACCC CGGTCATCGA TGCCGACCAC TGCCGCTTTT TAAACGGCAA AAAATGCCAG
GTCTGCGCCA AATTCTGCCC CTCTGAGGCC ATTGATTTCA GTCAAAAACC GCAAGACGTC
GTCCTCGAAG TGGGCTCCAT CGTCCTTGCC ACAGGGTACG ACGCCTTTGA TCCCGCCGGG
CTGGAACAAT ACGGCTACGG CCGCCTGGAC AATGTCTACA CTGCCTTGCA ATTCGAGCGC
CTCAATAACG CTGTCGGTCC CACCGGCGGC AAAATCCAGC TCAAGGACGG CTCCGCGCCC
CAGAGTGTGG GCATCGTCCA CTGCGTCGGC AGCCGCGACA CGCATTACCA CGAATATTGC
TCCCGGGTCT GCTGCATGTA CGCCCTGAAA TACGCCCACC TGATCAAGGA CAAGGTCGGT
CACGACGTCG CTATCTCCAA TTTCTACATC GATCTGCGGT GTTTTGGAAA AGGGTACGAA
GAGTTTTCCC GCCGGGTCCA GGAAGAAGGA GTCACCTTCA TCCGCGGTCG CCCCGCCGAA
ATCACCGACG AGGCCCAATC CCCCGCCGAG GACGGCAAGC TCGTGGTCGT TTGTGAAGAC
ACCTTGCTCG GCCGCAATCT GCGGGTGCCC GTGGACATGG TCATTTTGTG CACAGCCATG
GAGGCGGGGC GGGATGCCCC GGAGCTGGCC CGGCTTTTTG GCATCAGCCA GGGGCAGGAC
GGCTTTTTCC TTGAAGAACA CCCCAAACTC GGACCGGTGA CCACGGCCAC AGACGGTGTC
TTCCTGGGCG GATGCTGCCA GGGTCCCAAG GATATCCCGG ACGCGGTCTC CCACGCCTCC
GGGGCCGCGG CCCAGGCCCT GGCCCTGGCC ACCCGCGGCG AAGTGGCCAT CTCCCCGACT
ACAAGCTGGA TCGACCCGGA TATCTGTATC GGCTGCCAGG TCTGCATCGG GCTGTGCGCC
TACAGCGCGA TCACTTTTGA TGCCCGCCGG GGCGTGAGCG TGGTCAACGA GGCCCTGTGC
AAAGGATGCG GCAGCTGCGC CGGGTATTGC CCGAGCGGCG CGGCCCAGAT CAAACACTTC
AATCAGCAGC AGGTCTTCGC CGAACTCGAA GGCATTCTGG AGCCCGCTGC ACCGCCACCC
CCGGCCGAGG AAGAAGCACT CGCCGCGGAA AAAGGGGCCT CATAA
 
Protein sequence
MAVKIGVYVC HCGTNIASKV DCPEVARFAA GLPGVVVGRD YKFMCSDPGQ DMIIKDIQEL 
GLNRVVVSSC SPRLHEKTFQ KACLRAGLNP FLFQMTCIRE HCSWVTADPA EATRKAKHLV
AAAVNRVQRH AKLYARQEHV HPDVLVVGGG IAGIQAALDV AKSGHRVHLV EKAPSIGGHM
AQFDKTFPTL DCAACISTPK MVAVAQEPNI NLMTYAEVQE VKGFVGNYEI TVRQHPRYID
ATKCTGCGLC LEKCPTKVPS EFEEGLGMRK AIYRYSPQSV PATPVIDADH CRFLNGKKCQ
VCAKFCPSEA IDFSQKPQDV VLEVGSIVLA TGYDAFDPAG LEQYGYGRLD NVYTALQFER
LNNAVGPTGG KIQLKDGSAP QSVGIVHCVG SRDTHYHEYC SRVCCMYALK YAHLIKDKVG
HDVAISNFYI DLRCFGKGYE EFSRRVQEEG VTFIRGRPAE ITDEAQSPAE DGKLVVVCED
TLLGRNLRVP VDMVILCTAM EAGRDAPELA RLFGISQGQD GFFLEEHPKL GPVTTATDGV
FLGGCCQGPK DIPDAVSHAS GAAAQALALA TRGEVAISPT TSWIDPDICI GCQVCIGLCA
YSAITFDARR GVSVVNEALC KGCGSCAGYC PSGAAQIKHF NQQQVFAELE GILEPAAPPP
PAEEEALAAE KGAS