| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0419 |
|---|
| Symbol | |
|---|
| ID | 8418224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 513846 |
|---|
| End bp | 514994 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 645036980 |
|---|
| Product | Formate dehydrogenase |
|---|
| Protein accession | YP_003197294 |
|---|
| Protein GI | 258404552 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1035] Coenzyme F420-reducing hydrogenase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.272376 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAA CAGCACGAAT CGACGTCAAG GACCAGGGAC CGCTGGGGGC CATACGGGAA
CTGGGACACC ATATGCTCGA AAGCGGTGAC ATCCAGGCCC TGCTCGTGGC CAAGCGCTTG
CCGCGCCAGG GCAGTGTCAT GCCCGCCCTG ATCAGCGACC CCGCCGAACT CGAAGAGGCC
GACCCCCTCT CTCCGGCCTT TCCGCTCAAC GCGGCCAAGC TCGTCTCCCG CCTGACCAAA
GGGGAAACCC GGGGACGTAT CGGGGCCATC CTCCGGCCGT GCGAGATCCG GGCCTTCGTG
GAGCTGGTCA AACTCAACCA GGGCAGCATG GAGGATGTAC TGCTGCTGAG TCTGGATTGT
TTCGGGGCCT TGCCGAACAA CGAATACAGC GCCCTGGTCC GCCAGGAGGG CACCGCAGCG
CTCACCGAGC GTTACCTCAA AGCGGTCCAG GAAGGGCACG AGACCGTCAC TGCAACCTTC
CCTCTCGCTC CAGCCTGCGC GATCTGCGAA CACCCTGTGG CCGAAGCGGC GGACCTGCAC
ATCGGCCTGG CCGGCGTGGA TCTCTCCAAG CACCTGTTGC TCCAGGCCAA CACCGCCCGC
GGCGAGGGGT TGCTGACCCG GCTCGGCTAT CAGGACTGCC CGGAGCCCCC GGCCCACCGG
CAGGCCCTGG AAGGGTTGCG CAGCAGCAAA AAGACCGCCC GCGACGCCTG TTTTGCCGCC
ACCCAGGAGG CCACCACCGA CCTGGACAAA CTCTCAGAGT ACCTGGCCGG CTGCGTCAAC
TGCTACAATT GCCGCGTGGC CTGTCCGGTC TGCTATTGCA AGGAATGCGT CTTCGTCACC
GACGTTTTCG ACCACCGGCC GACGCAGTAT CTGGGCTGGG CCAACCGGCA GGGGAGCCTG
AAACTGCCCA CGGACACGGT TTTTTTTCAC CTGACCCGTT TGGCGCACAT GTCCCTGTCC
TGCGTGGGCT GCGGCCAATG CTCGAACGCC TGTCCCAACA ACATCCCGGT CATGGAACTT
TTCCGCACGG TGGCCCAGAA CACGCAGAAC GCCTTCGGAT ACGTCCCGGG CCGCAACCCC
GATGAACCGA TACCGCTGTC TGTCTTCAGC GAAGAGGAAT TCGAAGAAGT CGTCGACCAC
CTGGCCTGA
|
|---|
| Protein sequence | MATTARIDVK DQGPLGAIRE LGHHMLESGD IQALLVAKRL PRQGSVMPAL ISDPAELEEA
DPLSPAFPLN AAKLVSRLTK GETRGRIGAI LRPCEIRAFV ELVKLNQGSM EDVLLLSLDC
FGALPNNEYS ALVRQEGTAA LTERYLKAVQ EGHETVTATF PLAPACAICE HPVAEAADLH
IGLAGVDLSK HLLLQANTAR GEGLLTRLGY QDCPEPPAHR QALEGLRSSK KTARDACFAA
TQEATTDLDK LSEYLAGCVN CYNCRVACPV CYCKECVFVT DVFDHRPTQY LGWANRQGSL
KLPTDTVFFH LTRLAHMSLS CVGCGQCSNA CPNNIPVMEL FRTVAQNTQN AFGYVPGRNP
DEPIPLSVFS EEEFEEVVDH LA
|
|---|
| |