| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0311 |
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| Symbol | alaS |
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| ID | 8418115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 383393 |
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| End bp | 386035 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645036876 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_003197191 |
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| Protein GI | 258404449 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAACGG CAGCCGAAAT CAGACAACGT TTTCTCGAAT ACTTCGCCCG CCAGGGACAC
GAAATCGTCA AGAGTTCCCC CCTTGTGCCC AAGGATGATC CCAGCCTGTT GTTTACCAAT
GCCGGCATGG TCCAGTTCAA AAAGGTCTTT TTGGGACAGG ACAAGCGCAA CTACGTCCGG
GCCACCACGT CACAAAAATG CCTGCGTGTC GGCGGCAAGC ACAACGATCT TGAAAATGTC
GGTCGCACCG CCCGTCACCA CACCTTTTTC GAGATGCTCG GCAATTTTTC CTTCGGGGAC
TATTTCAAAA GAGAAGCGGT CGACTTTGCC TGGCGATTTT TGACCGAGGA ACTCGGCCTG
CCCAAGGATC GGCTCTACGC TTCGGTCTAC CGTGAGGACG ATGAGGCGTA TGAGCTGTGG
AAGGAGATCG CCGGTCTGCC CGACGAACGG ATTTACCGTC TCGGAGAAAA GGACAATTTC
TGGTCCATGG GAGATACCGG TCCTTGCGGG CCGTGTTCAG AGATTTTGAT CGACCAGGGC
AGCCATATGT CCTGCGGACC GGAGTGCGAG ATCGGCGTGT GCGAATGCGA CCGGTTTTTG
GAGATCTGGA ACCTGGTCTT CATGCAATTC GACCGCGACG CCTCGGGAAC CATGACCCCG
CTGCCCCAAC CCTCGATCGA TACCGGCATG GGCCTGGAAC GCATCGCTGC GGTCTGTCAG
GGCGTCTACT CCAATTTCGA TACCGATCTC TTTTCCGGGT TGATCCGGAC CACGGCTGAA
CGCGCCGGGG TCGTCTACGG CAAGGACGAG GAGATCAATA CTGCCTTGCG CGTGATCGGA
GACCACAGCC GGGCCGTGGC GTTCATGCTG GCCGATGGGA TCCTGCCCTC CAATGAAGGG
CGCGGCTATG TTCTGCGGCG CTTGATCCGT CGGGCTTTTC GTTTTGGCCG CTTGATCGGG
TTGCGCGATC CTTTCCTGTT CGATGTCTGC TCCCAGGTGG TCTCGGAAAT GGGCGACGAT
TATCCGGAAT TGCACGAAAC CGCTGCCTTC ATGGTCAAAG TCGTCCGGCA GGAAGAAGAA
CGGTTCGGCA CCACCCTGGA TAAAGGACTG GCCCTTTTGG AAGAGGAACT CGAATCCCTG
CAGGGCGCCG GACAAACCCA GGTGCCTGGT GGGGTGGCCT TCAAGCTCTA CGACACCTTC
GGGTTTCCCA TCGATATCGT CAATGACGTA GCTGAAGCGC GGGGCTTCAC TGTCGATGAG
GCCGGCTTCC AGGAGCATAT GCAGGCCCAA AAGGAGCGTT CCAAAGCGGC CTGGTCCGGC
AGCGGCGCCA CTGACATGGC CGCCCGATTT GTGGCCCTGC TTGAAGCGGG CGTCCAATCC
GATTTTGTCG GCTACGAGAC ATTGCAGTCG ACCAGCCGGA TTGCGGCGTT ATTGAAGGAC
GATGGGCAGG AGGTCCAGGA ACTCGCCGCC GGCGAAAACG GGTATCTGGT TACGGCCAGG
ACTCCGTTTT ATGGCGAATC CGGCGGCCAG GTCGGCGACA GCGGCCGGGT TATCGGGCCG
CGCGGCGACG GGGCGGTATT GGACACGATC AAGCCCGCTG CGCAGTTGAC GGTACACTCC
ATTACGGTCA AGCAAGGCTC CCTGGCCGTG GACGATGAGG CGGAACTCAT TGTGGACGAG
GGAGAGCGGG TGGCCACGGC CCGGAACCAT ACCGTGACCC ACCTTCTGCA TGCGGCTTTG
CGCGAAGTCC TGGGCGAGCA CGTCAAGCAG GCGGGATCGC TTGTGGCCTC AGATCGCCTC
CGCTTTGATC TGACCCATAT CCAGGCCTTG ACCGCCGAGG AGATCCAGGC GGTGGAAGAC
AAGGTCAACC AATCGATCCT CGCCGACACC CCGGTTGAAT CAGCCCACAT GGACTATTCG
CAGGCTGTCC AGGGGGGCGC GGTGGCCCTG TTCGGCGAAA AGTATGAGGA CGAGGTCCGA
GTTATCGATA TCCCCGGTGT TTCCCGGGAG TTGTGTGGCG GCACCCATTT GCGCGCCACC
GGGCAGGCCG GATTTTTTTG CATTTTGAGC GAGGCAGCGG TCTCCGCTGG CGTGCGGCGT
ATCGAAGCCG CCACCGGCTG GCAGGCGGTG CGCACTTTCA CCGAGCAGCG CACCCGATTG
CGTGAAGCCG CTCAGCTGTT GAAGGCCCCC CAAACCGAAA TCACGGGACG GATCCAGGAT
CTTCAGGAGC AATTGAAGTC GCTGCGCAAG GAGAAAGAGG CCCTTGAAGG GCAGCTCCAA
TCGGCCAAAG GCGGCGACCT CATGAGCCAG GTCGAGGAGC TTGGCGGCAT TCCGGTTTTG
ACCGCAGAGG TCGAAGCCCC TGATGTCAAG ACCCTGCGCG GGATGATGGA TGATGTCCGT
TCCAAATTGT CCTCAGGTGT GGTCCTGTTG GCTGCCAAGC AGGAAGCCAA GGCCATGCTG
ATTCTTTTTG TTTCTCAGGA TCTGCACGAC CGATTTACCG CCCCGGGGCT GATCAAGCAG
GTGGCCCAGG AAATCGGCGG CAGCGGCGGC GGCCGCCCGG ATGTGGCCCA GGCTGGCGGC
GGCAATCCCG AAGGGATCCC GGCGGCCCTG GATTCCTTGC GCAACCTTGT CGGCGGGCAA
TAA
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| Protein sequence | MVTAAEIRQR FLEYFARQGH EIVKSSPLVP KDDPSLLFTN AGMVQFKKVF LGQDKRNYVR
ATTSQKCLRV GGKHNDLENV GRTARHHTFF EMLGNFSFGD YFKREAVDFA WRFLTEELGL
PKDRLYASVY REDDEAYELW KEIAGLPDER IYRLGEKDNF WSMGDTGPCG PCSEILIDQG
SHMSCGPECE IGVCECDRFL EIWNLVFMQF DRDASGTMTP LPQPSIDTGM GLERIAAVCQ
GVYSNFDTDL FSGLIRTTAE RAGVVYGKDE EINTALRVIG DHSRAVAFML ADGILPSNEG
RGYVLRRLIR RAFRFGRLIG LRDPFLFDVC SQVVSEMGDD YPELHETAAF MVKVVRQEEE
RFGTTLDKGL ALLEEELESL QGAGQTQVPG GVAFKLYDTF GFPIDIVNDV AEARGFTVDE
AGFQEHMQAQ KERSKAAWSG SGATDMAARF VALLEAGVQS DFVGYETLQS TSRIAALLKD
DGQEVQELAA GENGYLVTAR TPFYGESGGQ VGDSGRVIGP RGDGAVLDTI KPAAQLTVHS
ITVKQGSLAV DDEAELIVDE GERVATARNH TVTHLLHAAL REVLGEHVKQ AGSLVASDRL
RFDLTHIQAL TAEEIQAVED KVNQSILADT PVESAHMDYS QAVQGGAVAL FGEKYEDEVR
VIDIPGVSRE LCGGTHLRAT GQAGFFCILS EAAVSAGVRR IEAATGWQAV RTFTEQRTRL
REAAQLLKAP QTEITGRIQD LQEQLKSLRK EKEALEGQLQ SAKGGDLMSQ VEELGGIPVL
TAEVEAPDVK TLRGMMDDVR SKLSSGVVLL AAKQEAKAML ILFVSQDLHD RFTAPGLIKQ
VAQEIGGSGG GRPDVAQAGG GNPEGIPAAL DSLRNLVGGQ
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