| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0289 |
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| Symbol | |
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| ID | 8418093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 357323 |
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| End bp | 359125 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645036854 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_003197169 |
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| Protein GI | 258404427 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCC AAGACCAACC GGAAACCTCA AGCAGTTGGC AACTCGCCAA ACGCACATTT
TCCTATTTTG CGCCGTACAA GGTCCGGATC GTCCTGGCCA TGTTGGCCAT GATCGTCGTC
GCCGCCTGTT CTGGGGCGAC TGCGTTTCTG GTCAAGCCAG CCCTGGACGA CATCTTCATC
GCCAAGGACA AAACCGCTCT GGCTCTCATC CCAGCCCTCA TCGTCGGAGT TTTCCTGCTC
AAAGGCGCGG CCCGCTTTCT GCAAAACTAC GAAATGAACG TCACCGGCCT GAAAGTCCTG
GAAAAACTGC GACAACAGCT TTACGACAAG ATGCTTTGTC TCCCGGTGCG GTTTTTCGAC
GACAACCAGG TCGGCAACCT CATGGCCCGA ATCCTCAACG ACGTGACCCA GGTCCGCTCC
AGCCTCCCGG CCTTGGTCAC CCTGTCACGG GAAGTGTTGA CGATGGTCGG CCTTTTGATC
GTTGTTTTCT ACCGCGACCC ATTTCTGGCC AGCATAGCTA TCTTTGTGCT CCCCCTGGCC
ATGTACCCGT TTTATTTTTT CGGCCGCAAG ATCCGCAAAC TCGGCCGCCG CAACCAAGCC
AAGATCTCCA ATATCTCGAC ATTTCTCCAA GAGATTTTCA GCGGCGTCAA AGTCGTCAAA
GCCTTTGCCA TGGAACGCCG GGAAGCGAAA CGCTTTGAAG CTGAAAACAG CCGTTTGGTC
TCCATTGCCA CCAGGCAGGT GGTCTACAAC GAGATGTCTT CGCCAATTAT GGAAACCATC
GGCGCGCTGG GAATGGGCCT GGTGGTCTGG TATGGGGGCA AGCAAGTTAT TGAAGGCGCC
TCCACCCCGG GTACATTTTT TTCCTTCATG ACCGCGCTGA TCATGCTCTA TGATCCGGTC
AAAAAACTGA ACAAAGCCAA CCTGACGATC CAAAAAGCCC TCGCCGCCGC AGAACGAATA
TTCGACATCC TGGACAATCC TCAAATCTGC GAGGAACAGA GCGGACGCAT TGAGTACGCT
CCTCCATTCC AGGGGCTCGC CTTTGAAAAC GTGACATTCC ATTACCCCGA CAGTGCAACA
CCTGCTCTTG AGCATGTGAC CTTCAGGATC GAACCAGGGG AACAGATAGC TATCGTCGGG
CCCAGCGGCG GGGGCAAATC AACCCTGATC AACCTTATCC CCCGCTTTCA CGATCCGACA
GAGGGGCAAA TTGTCCTCAA TGGCCATCCC GTCCAGGATT ACACACTGGC CAGCCTGCGC
CGCAATCTGG GCATTGTCTC CCAGGACAAC TTCCTTTTCA ATGCCTCCAT CCGGGACAAC
ATCGCCTACG GTCAGGAAGA TATCGATCCG AGCAAGCTGG AAAAAGCCGC TCAAGCCGCC
TACGCCCATG ATTTTATCTC GAACTTGCCA AATGGATACG AGACCATTAT AGGCGAGCGG
GGCGTCAAAC TCTCCGGCGG CCAGCGCCAG CGCATCGCAA TCGCCCGGGC CCTGCTCAAA
GATCCGGACC TGCTCATTCT CGACGAAGCC ACCAGCGCCC TGGATACAGA GTCCGAGCGC
ATCGTGCAGC AGGCCCTTGA AAACCTCATG CAGCACCGCA CCAGCCTGGT CATCGCCCAC
AGGCTGTCCA CGGTTCTCAA GGCCGATCGG ATCATCGTCA TGCAGGACGG CAAAGTCATC
GATCAAGCAC CGCATAGCAT CCTGATCCAA AGGTGTTATT TATATCAAAG ACTTTACAAC
ATGCAGTTTA AAAACAACGA AAGACAAAAG AATGAACATT TGCAGACTTA CCAACAACCT
TAA
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| Protein sequence | MKLQDQPETS SSWQLAKRTF SYFAPYKVRI VLAMLAMIVV AACSGATAFL VKPALDDIFI
AKDKTALALI PALIVGVFLL KGAARFLQNY EMNVTGLKVL EKLRQQLYDK MLCLPVRFFD
DNQVGNLMAR ILNDVTQVRS SLPALVTLSR EVLTMVGLLI VVFYRDPFLA SIAIFVLPLA
MYPFYFFGRK IRKLGRRNQA KISNISTFLQ EIFSGVKVVK AFAMERREAK RFEAENSRLV
SIATRQVVYN EMSSPIMETI GALGMGLVVW YGGKQVIEGA STPGTFFSFM TALIMLYDPV
KKLNKANLTI QKALAAAERI FDILDNPQIC EEQSGRIEYA PPFQGLAFEN VTFHYPDSAT
PALEHVTFRI EPGEQIAIVG PSGGGKSTLI NLIPRFHDPT EGQIVLNGHP VQDYTLASLR
RNLGIVSQDN FLFNASIRDN IAYGQEDIDP SKLEKAAQAA YAHDFISNLP NGYETIIGER
GVKLSGGQRQ RIAIARALLK DPDLLILDEA TSALDTESER IVQQALENLM QHRTSLVIAH
RLSTVLKADR IIVMQDGKVI DQAPHSILIQ RCYLYQRLYN MQFKNNERQK NEHLQTYQQP
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