| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0266 |
|---|
| Symbol | |
|---|
| ID | 8418070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 328370 |
|---|
| End bp | 330070 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645036831 |
|---|
| Product | nickel-dependent hydrogenase large subunit |
|---|
| Protein accession | YP_003197146 |
|---|
| Protein GI | 258404404 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0374] Ni,Fe-hydrogenase I large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.322067 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGTT GCAAAGCCCA AAAGGCACCC GCGGTGCCGG TGACCCCGCA GAGCAGCTAT
TCAGGTCCCA TTGTCATTGA CCCGGTGACC CGCATCGAGG GCCACCTCCG CGTGGAGGTC
GAGGTCGACA ACGGGAAAGT CAGCAATGTC TGGTCCAGCT CCCAGTTGTT CCGTGGCTTG
GAAACCATCC TCAAGGGGCG CGATCCCCGG GATGCCCAGC ACTTTACTCA ACGTTCCTGC
GGTGTGTGCA CCTATGTCCA CGCCCTGGCC TCCACCCGTT GCGTCGACAA CGCCGTGGGC
GTCAAAATCC CTGAAAATGC CCATCTGGTC CGCAATCTGG TGCTGTCCGC CCAGTATCTG
CACGACCATA TCGTCCACTT TTATCATCTG CACGCCCTGG ACTGGGTCGA TGTCACCAGC
GCTTTGAAGG CCGATCCGGC CAAGGCCGCG AAGATCGCCA ACAACATCTC TCCGCGGGTG
ACCAAGGCCG AAGATCTCAA GGCGGTGCAA CAGAAATTGC AGAGCTTTGT CGACAGCGGC
CAGCTCGGCA TCTTCACCAA CGCCTACTTT CTCGGCGGGC ACGAAGCCTA CTATCTGCCC
CCGGAAGTCA ACCTCATCGC CACCGCCCAC TATCTGGAAG CCTTGCGGTT GCAGGTCAAG
GCAGCCCGGG CCATGGCGGT CTTCGGCGCC AAGAACCCGC ACACCCAGTT CACCGTGGTC
GGCGGAGTGA CCTGCTACAA CAGCCTGACC CCGGAACGGA TCAGCGAATT CAAGTCGTTG
TACGAAGAAA CCCGCAAGTT CGTCGAAGAA TGCTATATCC CGGACCTGCT GGCCGTGGCC
GGCTACTACA AGGACTGGGG CAGCATTGGC GGCTGCACCA ATTTCCTGAG TTTCGGCGAG
TTCGGCAACG ATGACTACAG CATGGCCGAC AACTACATCC CGCAGGGCGT GATCATGAAT
CGCAACCTCG GGCAGGTAAC GGATTTCGAT CCCAATGCCA TCGCCGAACA CGTCAAGCAC
AGCTGGTACA AAGACGGCCC GGCTAAGCAC CCCTACGAGG GCGTGACCGA GCCGCAATAC
ACCAGCCTGG AAGACAAGGA TCGCTATTCC TGGATGAAGG CCCCGCGCTA TCAGGGCGAA
GCCATGGAAG TCGGTCCTCT GGCCCATGTC CTGGTCGCCT ATGCCCGCGG TCACAAGGAC
ACCGTCGAAG CCGTTGACTA TGTCTGCGGC CAACTCGGCG TGGGTAAGGA AGCCCTGTTT
TCGACCCTGG GCCGCACAGC CGCCCGTGGT ATCGAGACCC TGGTCACCGC CCGGAAAATG
GAGACCTGGA TCAATCAATT GGCCGAAAAT GTCTCCTCGG GCAACAACGA TCTCTACACC
CCGTGGGAAA TGCCCAACGA GGCGGAAGGT GTCGGGTTTG TCAATGCTCC CCGCGGCGGT
CTGAGCCACT GGGTCCGGAT CAAGAACAAA AAGATCGAGA ACTTCCAGCT GGTGGTGCCC
TCGACCTGGA ACCTTGGCCC CCGGTGCGGC GCGAACAAGC TCGGTCCGGT GGAAGAGGCC
CTCATGGGCA CGCCGGTGGT CGATCCTGAG CGGCCGGTGG AAATCCTGCG GACCGTTCAC
GCCTTCGACC CCTGCATTGC CTGCGGTGTC CACGTTATCG ACTCCAAGAC CAACAAGGTG
CACAAGTTCC GCGTCTTGTA A
|
|---|
| Protein sequence | MAGCKAQKAP AVPVTPQSSY SGPIVIDPVT RIEGHLRVEV EVDNGKVSNV WSSSQLFRGL
ETILKGRDPR DAQHFTQRSC GVCTYVHALA STRCVDNAVG VKIPENAHLV RNLVLSAQYL
HDHIVHFYHL HALDWVDVTS ALKADPAKAA KIANNISPRV TKAEDLKAVQ QKLQSFVDSG
QLGIFTNAYF LGGHEAYYLP PEVNLIATAH YLEALRLQVK AARAMAVFGA KNPHTQFTVV
GGVTCYNSLT PERISEFKSL YEETRKFVEE CYIPDLLAVA GYYKDWGSIG GCTNFLSFGE
FGNDDYSMAD NYIPQGVIMN RNLGQVTDFD PNAIAEHVKH SWYKDGPAKH PYEGVTEPQY
TSLEDKDRYS WMKAPRYQGE AMEVGPLAHV LVAYARGHKD TVEAVDYVCG QLGVGKEALF
STLGRTAARG IETLVTARKM ETWINQLAEN VSSGNNDLYT PWEMPNEAEG VGFVNAPRGG
LSHWVRIKNK KIENFQLVVP STWNLGPRCG ANKLGPVEEA LMGTPVVDPE RPVEILRTVH
AFDPCIACGV HVIDSKTNKV HKFRVL
|
|---|
| |