| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0176 |
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| Symbol | |
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| ID | 8417980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 223008 |
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| End bp | 225368 |
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| Gene Length | 2361 bp |
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| Protein Length | 786 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645036741 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_003197056 |
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| Protein GI | 258404314 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000781405 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACATC TCACTGGGGC TGAGAGCGGT GTGCCCGGAG CGATACCTGC TCATGAAGCG
TCCTTTTTGC AGCGTCAAGC CCTCGAACTC ATGCATCTTT CTGATTTTCC GCCCACCCAG
CCACGAGCGG GTGAACAGGA GGAAACCGTG GAGCCATTCG GAACAATCCT GGGCCGTTGC
CGGGGAAGCA AGGGGGCGCA TCTGGTCGTG CTCCAGGAGA AAGCGCTTTC TTTGCTGGGG
TCGTTATACG GTCAGGACGT TTTGGAAGCG GCCTTGCAAC GGGTCGAACA CGTCCTGCGT
CGTAGTGCGA ATACCTTTGC TCCGCCCCCG AATCCCCCGG CCGGCCTTAT TCGGTTCGAG
GCCGGCGAGT ATATTGTGGT CTGGAACGTA CCGGAGGCGG CGTCCTGGAT TGAGGATGCC
GCGTTTGTGT TGCGCATGGC CCTGCAAAAA GAATTGCAGC ACCTGTTTGT GCAAAGCCTG
GGTAAGCAGG CGCATGTGCG CTCCGGCCAA GCCTCGGAAA CCTGCGGCCG GGGGCGGACG
TGGGAACGCA CCTTCTACCA GGCCCTGGAT GCAGCTCGAA GCCGGTGCAG TGTGACCAGC
AACCTGGAGA ACCTGTCCCT GATGCGCGAG TTTGAATTGC TGGTGGCCGG GAGGACTGTG
GAGGCCCATT TCCAACCGAT TGTTTCCCTG GTTACGGGAC AGACCTTGGG CTGGGAGGCC
TTGAGTCGGG GACCTGAGGG ATCTCCGTTT CGCTCACCGC AGTTCATGTT CGATTTTGCC
GAGGAAAGCG ATTCCCTGTT CGCCCTGGAG CGGGCCTGCC GGGCCAGGGC GATTGCCGAG
TGCGGCCCTC TGCAAAAGGG ACAGAAATTG TTTTTGAACA TCCATCCGCG GACCATGCTC
GACCCGAATT TTACGCCCGG CCAGACCAAG CGGCTGCTGG CGAATACCGG CTTGGCGCCC
GACGATGTGG TTTTTGAAAT CACGGAACGA CATTCAGTCA AGGATTTCGG CCTGTTTCAC
AAGGCGTTGG ACCATTATCG CAGCCAAGGT TTTAAGGTGG CGGTGGATGA TGCCGGGGCC
GGGTATGCTG GATTGTGGTC GATTGCCCAA TTGCGGCCGG ACTATATCAA GGTCGACATG
TCTCTGGTTC AGGGGGTGGC CCATGACCCT GTGCGGCGGG CCCTTATGGA GACTTTTGTG
GCCTTTGCCG ACAAGGTCGG AGCCCGGGTG ATCGCCGAGG GGATCGAAAA CCATACCGAT
CTGTCCTCAC TGACGGCCAT GGGAGTCCAT TGCGGTCAGG GGTTTTTATT TGCCCGTCCG
GCCGCGCCCC GCCCGGAACC AGCGAATGTT ATGGACAATC TGGCCGCACC GGTGCCGAAG
CTGCACACCG GTTGCCGTAT CCCCCTGGCC AATCTGGTTG ACCCAGTGAT GCAGGTCGAT
CAATCGGCCA GTGTCGAGGA CGTGCGGCTG TTGATGAAAG AACAGAAGCC GTTGGCCAGT
GTGGTCGTGG TGCACCGGGA GCGCCCGGTC GGACTTATTA TGAGCCACCA TCTCGATCGG
CATTTGGCCT CGCGTTACGG GGTAGCGTTG TATTCCAAGC GCCCGGTCAC GAATTTGATG
GACGGGCAAG CCCTGATTGT CGACGAGAAT GAGGCCGTGG AGCGGGTGGC GCAATTGGCT
ATGGGACGGG AACGGTTCAA GGCGTATGAC GATATCATTG TTACCCGCCA TGGCCGTCTT
CTTGGGGTGG TTTCAGTGCA GCAGATGATC GATGCTATGG CCCAGGCCCA GGTGGAGATG
GCCAAAGGCG CCAATCCTCT CACGGGGCTG CCCGGGAATG TGGCTCTGGA GCAGGAAATC
GAAACCCGGA TGGCCCGGCA CGACCCCACG GCCATCGTGT ACGCCGATCT GGACAATTTT
AAAGTCTACA ACGACACCTA TGGCTTCAAG CAGGGCGATG AGGTCATTCA GCTCCTGGCC
AAGATCTTGG TCTGGGCGGG GAAACGTCAC GGGGCAGAAG GAAGTTTTGT GGGCCATATC
GGCGGCGATG ATTTTGTGCT TCTGGCCCAT CCCGATCAGG TGGAACGGAT TTGTACCGGC
GTGGTGCGCT GTTTCGGGCG CGCAGTCCGA GGATATTATA CCCAGCAGGA TCGCACGCAG
GGCTGTACCC GCGGGGTGGG GCGCGATGGC AGCGTCGCCT GCTTTCCCCT GGTCGCCGTC
TCCCTGGGCG TGGTGTTTTG CCACGGACCG TGTCCCATGC AGGTTCTCAG TGAGCGGGCT
GCCGAGATCA AACACTACGC AAAAACATAT TCCGGAAACA ATTATGTGCT GGACCGCCGG
GGGGTGCTTG GCGAAGGGTG A
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| Protein sequence | MIHLTGAESG VPGAIPAHEA SFLQRQALEL MHLSDFPPTQ PRAGEQEETV EPFGTILGRC
RGSKGAHLVV LQEKALSLLG SLYGQDVLEA ALQRVEHVLR RSANTFAPPP NPPAGLIRFE
AGEYIVVWNV PEAASWIEDA AFVLRMALQK ELQHLFVQSL GKQAHVRSGQ ASETCGRGRT
WERTFYQALD AARSRCSVTS NLENLSLMRE FELLVAGRTV EAHFQPIVSL VTGQTLGWEA
LSRGPEGSPF RSPQFMFDFA EESDSLFALE RACRARAIAE CGPLQKGQKL FLNIHPRTML
DPNFTPGQTK RLLANTGLAP DDVVFEITER HSVKDFGLFH KALDHYRSQG FKVAVDDAGA
GYAGLWSIAQ LRPDYIKVDM SLVQGVAHDP VRRALMETFV AFADKVGARV IAEGIENHTD
LSSLTAMGVH CGQGFLFARP AAPRPEPANV MDNLAAPVPK LHTGCRIPLA NLVDPVMQVD
QSASVEDVRL LMKEQKPLAS VVVVHRERPV GLIMSHHLDR HLASRYGVAL YSKRPVTNLM
DGQALIVDEN EAVERVAQLA MGRERFKAYD DIIVTRHGRL LGVVSVQQMI DAMAQAQVEM
AKGANPLTGL PGNVALEQEI ETRMARHDPT AIVYADLDNF KVYNDTYGFK QGDEVIQLLA
KILVWAGKRH GAEGSFVGHI GGDDFVLLAH PDQVERICTG VVRCFGRAVR GYYTQQDRTQ
GCTRGVGRDG SVACFPLVAV SLGVVFCHGP CPMQVLSERA AEIKHYAKTY SGNNYVLDRR
GVLGEG
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